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Items: 8

1.

Transcriptomics and metabolomics assisted molecular characterization of novel ERF transcription factors involved in the regulation of specialized metabolism in Ophiorrhiza pumila

(Submitter supplied) In this study, the genes that encode AP2/ERF transcription factors, namely OpERF1 to OpERF5, were isolated from HR of O. pumila. Phylogenetic analysis of AP2/ERF protein sequences suggested the close evolutionary relationship of OpERF1 with stress-responsive ERF factors in Arabidopsis and of OpERF2 with ERF factors reported to regulate alkaloid production, such as ORCA3 in Catharanthus roseus, NIC2-locus ERFs in tobacco, and JRE4 in tomato. more...
Organism:
Ophiorrhiza pumila
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22656
6 Samples
Download data: FASTA, TXT
Series
Accession:
GSE89674
ID:
200089674

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Ophiorrhiza pumila)

Organism:
Ophiorrhiza pumila
1 Series
6 Samples
Download data
Platform
Accession:
GPL22656
ID:
100022656

3.

O_pumila_HR_ERF2i-3

Organism:
Ophiorrhiza pumila
Source name:
RNA interference (RNAi) transgenic HR with suppressed OpERF2 (ERF2i), clone number 3
Platform:
GPL22656
Series:
GSE89674
Download data: TXT
Sample
Accession:
GSM2386589
ID:
302386589

SRA Run Selector

4.

O_pumila_HR_ERF2i-2

Organism:
Ophiorrhiza pumila
Source name:
RNA interference (RNAi) transgenic HR with suppressed OpERF2 (ERF2i), clone number 2
Platform:
GPL22656
Series:
GSE89674
Download data: TXT
Sample
Accession:
GSM2386588
ID:
302386588

SRA Run Selector

5.

O_pumila_HR_ERF1i-19

Organism:
Ophiorrhiza pumila
Source name:
RNA interference (RNAi) transgenic HR with suppressed OpERF1 (ERF1i), clone number 19
Platform:
GPL22656
Series:
GSE89674
Download data: TXT
Sample
Accession:
GSM2386587
ID:
302386587

SRA Run Selector

6.

O_pumila_HR_ERF1i-7

Organism:
Ophiorrhiza pumila
Source name:
RNA interference (RNAi) transgenic HR with suppressed OpERF1 (ERF1i), clone number 7
Platform:
GPL22656
Series:
GSE89674
Download data: TXT
Sample
Accession:
GSM2386586
ID:
302386586

SRA Run Selector

7.

O_pumila_HR_Gusi-10

Organism:
Ophiorrhiza pumila
Source name:
RNA interference (RNAi) transgenic HR with suppressed GUS (Gusi), clone number 10. Full ORF of Escherichia coli β-glucuronidase (GUS) was used as target sequence in the negative control construct
Platform:
GPL22656
Series:
GSE89674
Download data: TXT
Sample
Accession:
GSM2386585
ID:
302386585

SRA Run Selector

8.

O_pumila_HR_Gusi-9

Organism:
Ophiorrhiza pumila
Source name:
RNA interference (RNAi) transgenic HR with suppressed GUS (Gusi), clone number 9. Full ORF of Escherichia coli β-glucuronidase (GUS) was used as target sequence in the negative control construct
Platform:
GPL22656
Series:
GSE89674
Download data: TXT
Sample
Accession:
GSM2386584
ID:
302386584

SRA Run Selector

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db=gds|term=txid169656[Organism:exp]|query=1|qty=2|blobid=MCID_666c7fb66e9d376f233540c6|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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