txid16107[Organism:exp] - GEO DataSets - NCBI

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Select item 2001487621.

Small RNAs in monocots

(Submitter supplied) In monocots other than the cereals maize and rice, the repertoire and diversity of microRNAs (miRNAs) and the populations of phased, secondary, small interfering RNAs (phasiRNAs) are poorly characterized. To remedy this, we sequenced small RNAs (sRNAs) from vegetative and dissected inflorescence tissue in 28 phylogenetically diverse monocots and from several early-diverging angiosperm lineages, as well as publicly available data from 10 additional monocot species. more...

Organism:: Acorus calamus; Setaria viridis; Canna indica; Anomochloa marantoidea; Kniphofia uvaria; Phalaenopsis equestris; Sagittaria montevidensis; Freycinetia cumingiana; Liriope muscari; Musa acuminata var. zebrina; Musa ABB Group; Musa acuminata AAA Group; Colocasia esculenta; Lemna gibba; Oryza glaberrima; Ananas comosus; Cocos nucifera; Phyllostachys edulis; Phoenix dactylifera; Hemerocallis lilioasphodelus; Pharus parvifolius; Tradescantia fluminensis; Goudaea ospinae; Sorghum bicolor; Zea mays; Cyperus alternifolius; Zostera marina; Streptochaeta angustifolia; Elaeis guineensis; Nymphaea colorata; Echinodorus uruguayensis; Raddia brasiliensis; Prosthechea radiata

Type:: Non-coding RNA profiling by high throughput sequencing

34 related Platforms
195 Samples

Download data: TXT

Series

Accession:: GSE148762

ID:: 200148762

SRA Run Selector

Select item 2001127992.

Small RNA (sRNA) sequencing data from pre-meiotic and meiotic anthers of H. lilioasphodelus (Daylily)

(Submitter supplied) Purpose: To study pre-meiotic (21-nt) and meiotic (24-nt) phasiRNA pathways in non-grass monocots Methods: Anthers were dissected using a 2 mm stage micrometer in a stereo microscope, and immediately frozen in liquid nitrogen until total RNA isolation was performed. Small RNA, mRNA libraries were generated using short-read (Illumina) and Single Molecule Real Time SMRT (PacBio) sequencing approaches. more...

Organism:: Hemerocallis lilioasphodelus

Type:: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platforms:: GPL24855 GPL24856
26 Samples

Download data: FASTA, TXT

Series

Accession:: GSE112799

ID:: 200112799

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000248563.

PacBio RS II (Hemerocallis lilioasphodelus)

Organism:: Hemerocallis lilioasphodelus

1 Series
3 Samples

Platform

Accession:: GPL24856

ID:: 100024856

Select item 1000248554.

Illumina HiSeq 2500 (Hemerocallis lilioasphodelus)

Organism:: Hemerocallis lilioasphodelus

2 Series
24 Samples

Platform

Accession:: GPL24855

ID:: 100024855

Select item 3044785845.

Organism:: Hemerocallis lilioasphodelus

Source name:: sRNA Hemerocallis lilioasphodelus, leaves

Platform:: GPL24855
Series:: GSE148762

Download data: TXT

Sample

Accession:: GSM4478584

ID:: 304478584

SRA Run Selector

Select item 3030838946.

Daylily_03-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, 2.5-3.0 mm anthers, BM14-179

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083894

ID:: 303083894

SRA Run Selector

Select item 3030838937.

Daylily_02-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, 1.5-2.0 mm anthers, BM14-178

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083893

ID:: 303083893

SRA Run Selector

Select item 3030838928.

Daylily_01-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, <1.0 mm anthers, BM14-177

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083892

ID:: 303083892

SRA Run Selector

Select item 3030838919.

Daylily_03mmr-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, 2.5-3.0 mm anthers, BM14-179

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083891

ID:: 303083891

SRA Run Selector

Select item 30308389010.

Daylily_02mmr-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, 1.5-2.0 mm anthers, BM14-178

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083890

ID:: 303083890

SRA Run Selector

Select item 30308388911.

Daylily_01mmr-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, <1.0 mm anthers, BM14-177

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083889

ID:: 303083889

SRA Run Selector

Select item 30308388812.

Daylily_wb-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, whole bud, no sepals, with <1.0 mm anthers, BM14-180

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083888

ID:: 303083888

SRA Run Selector

Select item 30308388713.

Daylily_wbudr-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily, whole bud, no sepals, with <1.0 mm anthers, BM14-180

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083887

ID:: 303083887

SRA Run Selector

Select item 30308388614.

Daylily_le-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily leaf rep1, BM14-01

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083886

ID:: 303083886

SRA Run Selector

Select item 30308388515.

Daylily_leafr-mRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily leaf rep1, BM14-01

Platform:: GPL24855
Series:: GSE112799

Sample

Accession:: GSM3083885

ID:: 303083885

SRA Run Selector

Select item 30308388416.

Daylily_fem_4_r1-sRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily pistil stage 4 rep1, BM14-22

Platform:: GPL24855
Series:: GSE112799

Download data: TXT

Sample

Accession:: GSM3083884

ID:: 303083884

SRA Run Selector

Select item 30308388317.

Daylily_fem_3_r1-sRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily pistil stage 3 rep1, BM14-18

Platform:: GPL24855
Series:: GSE112799

Download data: TXT

Sample

Accession:: GSM3083883

ID:: 303083883

SRA Run Selector

Select item 30308388218.

Daylily_fem_2_r1-sRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily pistil stage 2 rep1, BM14-14

Platform:: GPL24855
Series:: GSE112799

Download data: TXT

Sample

Accession:: GSM3083882

ID:: 303083882

SRA Run Selector

Select item 30308388119.

Daylily_fem_1_r1-sRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily pistil stage 1 rep1, BM14-10

Platform:: GPL24855
Series:: GSE112799

Download data: TXT

Sample

Accession:: GSM3083881

ID:: 303083881

SRA Run Selector

Select item 30308388020.

Daylily_fem_0_r1-sRNA

Organism:: Hemerocallis lilioasphodelus

Source name:: Daylily pistil stage 0 rep1, BM14-06

Platform:: GPL24855
Series:: GSE112799

Download data: TXT

Sample

Accession:: GSM3083880

ID:: 303083880

SRA Run Selector

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txid16107[Organism:exp] (31)
GEO DataSets
Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1), mRNA
Homo sapiens ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1), mRNA
gi|1485819623|ref|NM_006208.3|

Nucleotide
ras-specific guanine nucleotide-releasing factor 1 isoform X2 [Oreochromis nilot...
ras-specific guanine nucleotide-releasing factor 1 isoform X2 [Oreochromis niloticus]
gi|348505822|ref|XP_003440459.1|

Protein
Sos1 protein, partial [Rattus norvegicus]
Sos1 protein, partial [Rattus norvegicus]
gi|71682972|gb|AAI00643.1|

Protein

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