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Items: 11

1.

Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation

(Submitter supplied) It is well known that bacteria often exist in naturally formed multispecies biofilms. Within these biofilms, interspecies interactions seem to play an important role in ecological processes. Little is known about the effects of interspecies interactions on gene expression in these multispecies biofilms. This study presents a comparative gene expression analysis of the Xanthomonas retroflexus transcriptome when grown in a single-species biofilm and in dual- and four-species consortia with Stenotrophomonas rhizophila, Microbacterium oxydans and Paenibacillus amylolyticus. more...
Organism:
Stenotrophomonas rhizophila; Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus
Type:
Expression profiling by high throughput sequencing
5 related Platforms
17 Samples
Download data: FASTA, TXT
Series
Accession:
GSE80267
ID:
200080267

SRA Run Selector

2.

Illumina HiSeq 2000 (Microbacterium oxydans; Paenibacillus amylolyticus; Stenotrophomonas rhizophila; Xanthomonas retroflexus)

Organism:
Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus
1 Series
5 Samples
Download data
Platform
Accession:
GPL21732
ID:
100021732

3.

Illumina HiSeq 2000 (Paenibacillus amylolyticus; Xanthomonas retroflexus)

Organism:
Paenibacillus amylolyticus; Xanthomonas retroflexus
1 Series
3 Samples
Download data
Platform
Accession:
GPL21731
ID:
100021731

4.

Fifth replicate of four species biofilm

Organism:
Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus
Source name:
four species biofilm
Platform:
GPL21732
Series:
GSE80267
Download data
Sample
Accession:
GSM2123146
ID:
302123146

SRA Run Selector

5.

Fourth replicate of four species biofilm

Organism:
Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus
Source name:
four species biofilm
Platform:
GPL21732
Series:
GSE80267
Download data
Sample
Accession:
GSM2123145
ID:
302123145

SRA Run Selector

6.

Third replicate of four species biofilm

Organism:
Stenotrophomonas rhizophila; Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus
Source name:
four species biofilm
Platform:
GPL21732
Series:
GSE80267
Download data
Sample
Accession:
GSM2123144
ID:
302123144

SRA Run Selector

7.

Second replicate of four species biofilm

Organism:
Stenotrophomonas rhizophila; Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus
Source name:
four species biofilm
Platform:
GPL21732
Series:
GSE80267
Download data
Sample
Accession:
GSM2123143
ID:
302123143

SRA Run Selector

8.

First replicate of four species biofilm

Organism:
Stenotrophomonas rhizophila; Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus
Source name:
four species biofilm
Platform:
GPL21732
Series:
GSE80267
Download data
Sample
Accession:
GSM2123142
ID:
302123142

SRA Run Selector

9.

Third replicate of X. Retroflexus and P. amylolyticus in dual species biofilm

Organism:
Paenibacillus amylolyticus; Xanthomonas retroflexus
Source name:
dual species biofilm
Platform:
GPL21731
Series:
GSE80267
Download data
Sample
Accession:
GSM2123141
ID:
302123141

SRA Run Selector

10.

Second replicate of X. Retroflexus and P. amylolyticus in dual species biofilm

Organism:
Paenibacillus amylolyticus; Xanthomonas retroflexus
Source name:
dual species biofilm
Platform:
GPL21731
Series:
GSE80267
Download data
Sample
Accession:
GSM2123140
ID:
302123140

SRA Run Selector

11.

First replicate of X. Retroflexus and P. amylolyticus in dual species biofilm

Organism:
Paenibacillus amylolyticus; Xanthomonas retroflexus
Source name:
dual species biofilm
Platform:
GPL21731
Series:
GSE80267
Download data
Sample
Accession:
GSM2123139
ID:
302123139

SRA Run Selector

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db=gds|term=txid1451[Organism:noexp]|query=8|qty=5|blobid=MCID_673b43bae6b130283a09933c|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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