txid1451[Organism:noexp] - GEO DataSets - NCBI

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Items: 11

Select item 2000802671.

Distinct gene expression profile of Xanthomonas retroflexus engaged in synergistic multispecies biofilm formation

(Submitter supplied) It is well known that bacteria often exist in naturally formed multispecies biofilms. Within these biofilms, interspecies interactions seem to play an important role in ecological processes. Little is known about the effects of interspecies interactions on gene expression in these multispecies biofilms. This study presents a comparative gene expression analysis of the Xanthomonas retroflexus transcriptome when grown in a single-species biofilm and in dual- and four-species consortia with Stenotrophomonas rhizophila, Microbacterium oxydans and Paenibacillus amylolyticus. more...

Organism:: Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus; Stenotrophomonas rhizophila

Type:: Expression profiling by high throughput sequencing

5 related Platforms
17 Samples

Download data: FASTA, TXT

Series

Accession:: GSE80267

ID:: 200080267

SRA Run Selector

Select item 1000217322.

Illumina HiSeq 2000 (Microbacterium oxydans; Paenibacillus amylolyticus; Stenotrophomonas rhizophila; Xanthomonas retroflexus)

Organism:: Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus

1 Series
5 Samples

Platform

Accession:: GPL21732

ID:: 100021732

Select item 1000217313.

Illumina HiSeq 2000 (Paenibacillus amylolyticus; Xanthomonas retroflexus)

Organism:: Paenibacillus amylolyticus; Xanthomonas retroflexus

1 Series
3 Samples

Platform

Accession:: GPL21731

ID:: 100021731

Select item 3021231464.

Fifth replicate of four species biofilm

Organism:: Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus

Source name:: four species biofilm

Platform:: GPL21732
Series:: GSE80267

Sample

Accession:: GSM2123146

ID:: 302123146

SRA Run Selector

Select item 3021231455.

Fourth replicate of four species biofilm

Organism:: Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus

Source name:: four species biofilm

Platform:: GPL21732
Series:: GSE80267

Sample

Accession:: GSM2123145

ID:: 302123145

SRA Run Selector

Select item 3021231446.

Third replicate of four species biofilm

Organism:: Stenotrophomonas rhizophila; Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus

Source name:: four species biofilm

Platform:: GPL21732
Series:: GSE80267

Sample

Accession:: GSM2123144

ID:: 302123144

SRA Run Selector

Select item 3021231437.

Second replicate of four species biofilm

Organism:: Stenotrophomonas rhizophila; Paenibacillus amylolyticus; Microbacterium oxydans; Xanthomonas retroflexus

Source name:: four species biofilm

Platform:: GPL21732
Series:: GSE80267

Sample

Accession:: GSM2123143

ID:: 302123143

SRA Run Selector

Select item 3021231428.

First replicate of four species biofilm

Organism:: Paenibacillus amylolyticus; Microbacterium oxydans; Stenotrophomonas rhizophila; Xanthomonas retroflexus

Source name:: four species biofilm

Platform:: GPL21732
Series:: GSE80267

Sample

Accession:: GSM2123142

ID:: 302123142

SRA Run Selector

Select item 3021231419.

Third replicate of X. Retroflexus and P. amylolyticus in dual species biofilm

Organism:: Paenibacillus amylolyticus; Xanthomonas retroflexus

Source name:: dual species biofilm

Platform:: GPL21731
Series:: GSE80267

Sample

Accession:: GSM2123141

ID:: 302123141

SRA Run Selector

Select item 30212314010.

Second replicate of X. Retroflexus and P. amylolyticus in dual species biofilm

Organism:: Paenibacillus amylolyticus; Xanthomonas retroflexus

Source name:: dual species biofilm

Platform:: GPL21731
Series:: GSE80267

Sample

Accession:: GSM2123140

ID:: 302123140

SRA Run Selector

Select item 30212313911.

First replicate of X. Retroflexus and P. amylolyticus in dual species biofilm

Organism:: Paenibacillus amylolyticus; Xanthomonas retroflexus

Source name:: dual species biofilm

Platform:: GPL21731
Series:: GSE80267

Sample

Accession:: GSM2123139

ID:: 302123139

SRA Run Selector

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