GEO DataSets

(Submitter supplied) The capability of the U.S. Food and Drug Administration Enteric Viruses tiling microarray (FDA-EVIR) was assessed for rapid molecular identification of human norovirus (NoV) and hepatitis A virus (HAV) extracted from artificially inoculated fresh produce. Two published viral extraction strategies, total RNA extraction or virus particle isolation, were employed to prepare the viral targets. We also assessed the amount of viral RNA extracted from celery by three commercially-available kits and how well that RNA performed on the FDA-EVIR. more...

Organism:

Apium graveolens; Solanum lycopersicum; Coxsackievirus; Sapovirus; Norovirus; Allium fistulosum; Rotavirus; Paslahepevirus balayani; Bacillus subtilis; unidentified adenovirus; Hepatovirus A; Astrovirus sp.

Type:

Expression profiling by genome tiling array

Platform:

GPL27751

17 Samples

Download data: CEL

(Submitter supplied) MicroRNAs (miRNAs), including host miRNAs and viral miRNAs, play vital roles in regulating host-virus interactions. DNA viruses encode miRNAs that regulate the viral life cycle. However, it is generally believed that cytoplasmic RNA viruses do not encode miRNAs, owing to inaccessible cellular miRNA processing machinery. Here, we provide a comprehensive genome-wide analysis and identification of miRNAs that were derived from hepatitis A virus (HAV; Hu/China/H2/1982), which is a typical cytoplasmic RNA virus. more...

Organism:

Homo sapiens; Hepatovirus A

Type:

Non-coding RNA profiling by high throughput sequencing

Platforms:

GPL18215 GPL11154

2 Samples

Download data: FA

(Submitter supplied) Affymetrix

Organism:

Bacillus subtilis; unidentified adenovirus; Rotavirus; Coxsackievirus; Hepatovirus A; Sapovirus; Norovirus; Astrovirus sp.; Paslahepevirus balayani

1 Series

17 Samples

Download data: BPMAP, CIF, CSV, GRC