Scolopendrium sibiricum - GEO DataSets - NCBI

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Select item 2000988741.

Cold adaptation of tRNA nucleotidyltransferases: a tradeoff in activity, stability and fidelity

(Submitter supplied) CCA-adding enzymes are highly specific RNA polymerases that synthesize and maintain the sequence CCA at the tRNA 3‘-end. Here, we investigated the impact of cold adaptation on the reactivity and specificity of CCA-adding enzymes from psychrophilic bacteria. A comparative study of the corresponding enzymes from closely related psychro-, meso-, and thermophilic Bacillales indicates that the cold-adapted enzymes show a considerable error rate during CCA synthesis, resulting in additional incorporations of C and A residues. more...

Organism:: Planococcus halocryophilus; Geobacillus stearothermophilus; Bacillus subtilis subsp. subtilis str. 168; Exiguobacterium artemiae

Type:: Expression profiling by high throughput sequencing

4 related Platforms
23 Samples

Download data: CSV

Series

Accession:: GSE98874

ID:: 200098874

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000101332.

Architecture of thermal adaptation in Exiguobacterium sibiricum strain 255-15: A genome and transcriptome approach

(Submitter supplied) Several microorganisms have wide temperature growth range and versatility to tolerate large thermal fluctuations in diverse environments. To better understand thermal adaptation of psychrotrophs, Exiguobacterium sibiricum strain 255-15 was used, a psychrotrophic bacterium that grows from -5°C to 39°C. Its genome is approximately 3 Mb in size, has a GC content of 47.7% and includes 2,978 putative protein-encoding genes (CDS). more...

Organism:: Exiguobacterium sibiricum 255-15

Type:: Expression profiling by array

Platform:: GPL6358
36 Samples

Download data: GPR

Series

Accession:: GSE10133

ID:: 200010133

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000234713.

Illumina MiSeq (Exiguobacterium sibiricum)

Organism:: Exiguobacterium artemiae

1 Series
6 Samples

Platform

Accession:: GPL23471

ID:: 100023471

Select item 1000149354.

Tiedje Lab Desulfitobacterium hafniense DCB-2 oligo array

(Submitter supplied) Desulfitobacterium hafniense DCB-2 (JGI ID 2351519/4083484) spotted oligonucleotides on glass slides Protocol: as in: Rodrigues, D.F., N. Ivannova, J. Zhou, Z. He, M. Webner, J.M. Tiedje, 2008 Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach. BMC Genomics. 9:547.

Organism:: Desulfitobacterium hafniense DCB-2

1 Series
4 Samples

Platform

Accession:: GPL14935

ID:: 100014935

Select item 1000063585.

MSU/JMT Exiguobacterium sibiricum 70mer array v. 1.0

(Submitter supplied) The design criteria of the 70 mer probes were as follows: (i) 85% sequence similarity, 18-base stretch, and -35 kcal/mol free energy for gene-specific probes; and (ii) 96% sequence similarity, 55-base stretch, and -90 kcal/mol free energy for group-specific probes. Based on those criteria, 2931 CDS had gene-specific probes; 25 CDS were covered by six group-specific probes; no qualified probes were selected for 22 CDS. more...

Organism:: Exiguobacterium sibiricum 255-15

1 Series
36 Samples

Download data: TXT

Platform

Accession:: GPL6358

ID:: 100006358

Select item 3002561506.

Comparison -2.5°C versus 10°C - Replicate 3

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 10°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256150

ID:: 300256150

Select item 3002561497.

Comparison -2.5°C versus 10°C - Replicate 2

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 10°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256149

ID:: 300256149

Select item 3002561488.

Comparison -2.5°C versus 10°C - Replicate 1

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 10°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256148

ID:: 300256148

Select item 3002561479.

Comparison 10°C versus -2.5°C - Replicate 3

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at 10°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at -2.5°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256147

ID:: 300256147

Select item 30025614610.

Comparison 10°C versus -2.5°C - Replicate 2

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at 10°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at -2.5°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256146

ID:: 300256146

Select item 30025614511.

Comparison 10°C versus -2.5°C - Replicate 1

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at 10°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at -2.5°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256145

ID:: 300256145

Select item 30025614412.

Comparison -2.5°C versus 39°C - Replicate 3

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 39°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256144

ID:: 300256144

Select item 30025614313.

Comparison -2.5°C versus 39°C - Replicate 2

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 39°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256143

ID:: 300256143

Select item 30025614214.

Comparison -2.5°C versus 39°C - Replicate 1

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 39°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256142

ID:: 300256142

Select item 30025614115.

Comparison 39°C versus -2.5°C - Replicate 3

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at 39°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at -2.5°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256141

ID:: 300256141

Select item 30025614016.

Comparison 39°C versus -2.5°C - Replicate 2

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at 39°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at -2.5°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256140

ID:: 300256140

Select item 30025613917.

Comparison 39°C versus -2.5°C - Replicate 1

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at 39°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at -2.5°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256139

ID:: 300256139

Select item 30025613818.

Comparison -2.5°C versus 28°C - Replicate 3

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 28°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256138

ID:: 300256138

Select item 30025613719.

Comparison -2.5°C versus 28°C - Replicate 2

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 28°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256137

ID:: 300256137

Select item 30025613620.

Comparison -2.5°C versus 28°C - Replicate 1

Organism:: Exiguobacterium sibiricum 255-15

Source name:: E. sibiricum 255-15 grown at -2.5°C labeled with Cy5 (red) (channel 1) E. sibiricum 255-15 grown at 28°C labeled with Cy3 (green) (channel 2)

Platform:: GPL6358
Series:: GSE10133

Download data: GPR

Sample

Accession:: GSM256136

ID:: 300256136

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