meconium bamlerianum - GEO DataSets

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Select item 2001534751.

NTF3 as a biomarker for prediction allergic diseases in children postnatal or adolescence

(Submitter supplied) DNA methylation alteration marks phthlate mediated transgenerational inheritance in murine allergic diseases.

Organism:: Homo sapiens

Type:: Methylation profiling by genome tiling array

Platform:: GPL21145
12 Samples

Download data: TXT

Series

Accession:: GSE153475

ID:: 200153475

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2001780882.

CD16+ CD163+ monocytes traffic to sites of inflammation in NEC

(Submitter supplied) Using suspension (CyTOF) and imaging (IMC) mass cytometry coupled with single cell RNA sequencing (scRNAseq) on intestinal mucosa, we demonstrated severe inflammation in patients with NEC. scRNAseq revealed that the CD163+CD16+ monocytes/Mf transcribe a large number of inflammatory genes including TREM1, IL1a and IL1b, IL8 and calprotectin. Gene set enrichment analysis identified pathways involved in chemotaxis and migration to be enriched in the clusters containing CD163+CD16+ monocytes/Mf, confirming our observations that they traffic from the periphery.

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16791
6 Samples

Download data: H5AD, H5SEURAT, RDATA

Series

Accession:: GSE178088

ID:: 200178088

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000606903.

Gene Expression in Transformed Lymphocytes Reveals Phenotype-Modifying Pathways in Cystic Fibrosis

(Submitter supplied) Heritable genetic variants modify cystic fibrosis (CF) clinical phenotypes, e.g., lung disease, age-of-onset of persistent Pseudomonas aeruginosa (P. aeruginosa), and meconium ileus (MI). Previous genome wide association studies (GWAS) have begun to inform the genetic architecture of CF phenotypes. Analyses of gene expression will complement GWAS, as demonstrated by analyses of gene expression in lymphoblastoid cell lines (LCLs) to identify disease-related pathophysiological processes for non-CF complex traits. In this study, global gene expression was measured in RNA from LCLs from 754 CF patients and analyzed for association with lung disease severity, age-of-onset of persistent P. more...

Organism:: Homo sapiens

Type:: Expression profiling by array

Platform:: GPL5175
754 Samples

Download data: CEL

Series

Accession:: GSE60690

ID:: 200060690

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000712054.

Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus

(Submitter supplied) Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) infection of 3rd trimester pregnant pigs can result in transmission of the virus to the fetus and ultimately death in utero or postnatally. Little is known about the immune response to infection at the maternal-fetal interface and in the fetus itself, or the molecular events behind virus transmission and disease progression in the fetus. To investigate these processes, RNA-sequencing of two tissues, uterine endothelium adjacent to the umbilical attachment site and fetal thymus, was performed 21 days post challenge on four groups of fetuses selected from a large PRRSV challenge experiment of pregnant gilts.

Organism:: Sus scrofa

Type:: Expression profiling by high throughput sequencing

Platform:: GPL11429
96 Samples

Download data: TXT

Series

Accession:: GSE71205

ID:: 200071205

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000795505.

mRNA sequence data from anterior ovarioles of w1118 virgin females of Drosophila melanogaster

(Submitter supplied) Transcriptional profiling of anterior ovarioles (germaria and round previtellogenic egg chambers) of w1118 virgin females of Drosophila melanogaster 1 to 8 days post eclosion.

Organism:: Drosophila melanogaster

Type:: Expression profiling by high throughput sequencing

Platform:: GPL13304
22 Samples

Download data: GTF, TXT

Series

Accession:: GSE79550

ID:: 200079550

SRA Run Selector

Select item 2000249066.

Gene expression of metamorphosis in fire ants

(Submitter supplied) Ants are among the most successful animals on earth, with societies of a complexity that rivals our own. These societies are characterized by reproductive division of labor between female queens that can live several years and lay thousands of eggs per day, workers that live only a few months and are sterile, and males that live only a few weeks and do not participate in colony tasks. These striking differences in lifespan and roles are echoed by extensive morphological and physiological divergence. more...

Organism:: Solenopsis invicta

Type:: Expression profiling by array

Platform:: GPL11109
268 Samples

Download data: GPR

Series

Accession:: GSE24906

ID:: 200024906

Analyze with GEO2R

Select item 2000007657.

Control vs CF Small Intestine

(Submitter supplied) Total RNA was prepared from the entire small intestines of 40 day old Control and CFTR null mice (2 males and 1 female of each genotype), congenic on the black6 background, using TRIzol reagent. Mice were fed Peptamen from age 10 days to prevent intestinal obstruction. Keywords: parallel sample

Organism:: Mus musculus

Type:: Expression profiling by array

Dataset:: GDS588
Platform:: GPL81
6 Samples

Download data: CEL

Series

Accession:: GSE765

ID:: 200000765

Select item 5888.

Cystic fibrosis and small intestine

Analysis of small intestine from 40 day old CFTR-/- and CFTR+/+ mice. The CFTR null mouse has a severe intestinal phenotype serving as model for cystic fibrosis related growth deficiency, meconium ileus, and distal intestinal obstructive syndrome.

Organism:: Mus musculus

Type:: Expression profiling by array, count, 2 genotype/variation sets

Platform:: GPL81
Series:: GSE765
6 Samples

Download data: CEL

DataSet

Accession:: GDS588

ID:: 588

Select item 1000000819.

[MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 07, 2012: annotation table updated with netaffx build 32 June 24, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site The MG-U74 set includes 3 arrays with a total of 36899 entries and was indexed 29-Jan-2002. more...