GEO DataSets

(Submitter supplied) This dataset includes RNAseq data of 7 tissues/developmental stages of Lathyrus sativus genotype LSWT11 and 2 tissues with drought- and well-watered treatments of Lathyrus sativus genotypes LS007 and Mahateora. These data were used in the functional annotation pipeline of the Rbp1.0 genome assembly of LS007. The multi-tissue transcriptome was also used to support gene candidate identification by mRNA abundance. more...

Organism:

Lathyrus sativus

Type:

Expression profiling by high throughput sequencing; Other

Platform:

GPL33069

35 Samples

Download data: CSV, TXT

(Submitter supplied) Using a cDNA microarray themed on Ascochyta-Pulse interaction resistance response was studied in two lentil varieties, specifically in response to A. lentis inoculation in a highly resistant (ILL7537) and highly susceptible (ILL6002) lentil variety. The experiments were conducted in reference design, where samples from mock-inoculated controls acted as references against post-inoculation samples and the plants were grown using a uniform and standardized experimental system that minimized environmental effects. more...

Organism:

Lathyrus sativus; Cicer arietinum; Lens culinaris; Lens culinaris subsp. culinaris

Type:

Expression profiling by array

Platform:

GPL3649

10 Samples

Download data: TXT

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea genotype ICC 3996 to drought, cold and high-salinity stresses. The experiments were performed in three biological replications. The experiments were conducted in reference design where respective tissues from unstressed plants served as control. more...

Organism:

Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:

Expression profiling by array

Platform:

GPL5631

8 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:

Expression profiling by array

Platform:

GPL3649

32 Samples

Download data: TXT

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea accessions tolerant and susceptible to high-salinity stress. Two groups of a tolerant and susceptible accession were challenged with high-salinity stress. more...

Organism:

Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:

Expression profiling by array

Platform:

GPL3649

16 Samples

Download data: TXT

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea accessions tolerant and susceptible to cold stress. Two groups of a tolerant and susceptible accession were challenged with cold stress. The experiments were performed in three biological replications. more...

Organism:

Lathyrus sativus; Cicer arietinum; Lens culinaris

Type:

Expression profiling by array

Platform:

GPL3649

8 Samples

Download data: TXT

(Submitter supplied) ‘Pulsechip’, a boutique cDNA microarray, generated from a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, was employed to generate an expression profile of chickpea accessions tolerant and susceptible to drought stress. Two groups of a tolerant and susceptible accession were challenged with drought stress. The experiments were performed in three biological replications. more...

Organism:

Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:

Expression profiling by array

Platform:

GPL3649

8 Samples

Download data: TXT

(Submitter supplied) Using microarray technology and a set of chickpea (Cicer arietinum L.) unigenes and grasspea (Lathyrus sativus L.) ESTs, chickpea responses to treatments with the defence signalling compounds salicylic acid (SA), methyl jasmonate (MeJA), and aminocyclopropane carboxylic acid (ACC) were studied in four chickpea genotypes with ranging levels of resistance to ascochyta blight (Ascochyta rabiei (Pass.) L.). more...

Organism:

Cicer arietinum; Lathyrus sativus

Type:

Expression profiling by array

Platform:

GPL4079

18 Samples

Download data: TXT

(Submitter supplied) Using microarray technology and a set of chickpea (Cicer arietinum L.) unigenes, grasspea (Lathyrus sativus L.) ESTs and lentil (Lens culinaris Med.) resistance gene analogs, the ascochyta blight (Ascochyta rabiei (Pass.) L.) resistance response was studied in four chickpea genotypes, including resistant, moderately resistant, susceptible and wild relative (Cicer echinospermum L.) genotypes. The experimental system minimized environmental effects and was conducted in reference design, where samples from mock-inoculated controls acted as references against post-inoculation samples. more...

Organism:

Cicer arietinum; Lens culinaris; Lathyrus sativus

Type:

Expression profiling by array

Platform:

GPL3649

20 Samples

Download data: TXT

(Submitter supplied) Coram TE and Pang ECK. 2006. Expression profiling of chickpea genes differentially regulated during a resistance response to Ascochyta rabiei. Published in Plant Biotechnology Journal. A total of 715 ESTs, 41 RGA DNA sequences, and 12 controls were used in the construction of 768-feature microarrays according to minimum information about a microarray experiment guidelines (MIAME). Of the 715 ESTs, 516 were obtained from a previously synthesized and characterized EST collection constructed from cDNA of the ascochyta blight resistant ICC3996 chickpea genotype. more...

Organism:

Cicer arietinum; Lathyrus sativus; Lens culinaris

1 Series

8 Samples

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(Submitter supplied) Coram TE and Pang ECK. 2006. Expression profiling of chickpea genes differentially regulated during a resistance response to Ascochyta rabiei. Published in Plant Biotechnology Journal. A total of 715 ESTs and 12 controls were used in the construction of 727-feature microarrays according to minimum information about a microarray experiment guidelines (MIAME). Of the 715 ESTs, 516 were obtained from a previously synthesized and characterized EST collection constructed from cDNA of the ascochyta blight resistant ICC3996 chickpea genotype. more...

Organism:

Cicer arietinum; Lathyrus sativus

1 Series

18 Samples

Download data

(Submitter supplied) Coram TE and Pang ECK. 2006. Expression profiling of chickpea genes differentially regulated during a resistance response to Ascochyta rabiei. Published in Plant Biotechnology Journal. A total of 715 ESTs, 41 RGA DNA sequences, and 12 controls were used in the construction of 768-feature microarrays according to minimum information about a microarray experiment guidelines (MIAME). Of the 715 ESTs, 516 were obtained from a previously synthesized and characterized EST collection constructed from cDNA of the ascochyta blight resistant ICC3996 chickpea genotype. more...

Organism:

Cicer arietinum; Lathyrus sativus; Lens culinaris

6 Series

62 Samples

Download data: XLS