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Items: 4

1.

Vitamin-D Responsive SGPP2 Variants Associated with Lung Cell Expression and Lung Function

(Submitter supplied) Background: Vitamin D is associated with lung health in epidemiologi studies, but mechanisms mediating observed associations are poorly understood. This study explores mechanisms for an effect of vitamin D in lung through an in vivo gene expression study, an expression quantitative trait loci (eQTL) analysis in lung tissue, and a population-based cohort study of sequence variants. Methods: Microarray analysis investigated the association of gene expression in small airway epithelial cell with serum 25[OH]D in adult nonsmokers. more...
Organism:
Homo sapiens
Type:
Expression profiling by array; SNP genotyping by SNP array; Genome variation profiling by SNP array
Platforms:
GPL6804 GPL570
142 Samples
Download data: CEL, CHP
Series
Accession:
GSE44865
ID:
200044865

Analyze with GEO2R

2.

eQTL analysis of many thousands of expressed genes while simultaneously controlling for hidden factors

(Submitter supplied) Motivation: Identification of eQTL, the genetic loci that contribute to heritable variation in gene expression, can be obstructed by factors that produce variation in expression profiles if these factors are unmeasured or hidden from direct analysis. Methods: We have developed a method for Hidden Expression Factor analysis (HEFT) that identifies individual and pleiotropic effects of eQTL in the presence of hidden factors. more...
Organism:
Homo sapiens
Type:
Expression profiling by array; SNP genotyping by SNP array
Platforms:
GPL6804 GPL570
232 Samples
Download data: CEL, CHP, TXT
Series
Accession:
GSE40364
ID:
200040364

PubMed Full text in PMC Similar studies Analyze with GEO2R

3.

[GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The SNP Array 5.0 is a single microarray featuring all single nucleotide polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as well as 420,000 additional non-polymorphic probes that can measure other genetic differences, such as copy number variation. more...
Organism:
Homo sapiens
14 Series
1 Related Platform
751 Samples
Download data
Platform
Accession:
GPL6804
ID:
100006804

4.

DGM-00993_gt

Organism:
Homo sapiens
Source name:
small airways
Platform:
GPL6804
Series:
GSE40364 GSE44865
Download data: CEL, CHP
Sample
Accession:
GSM992078
ID:
300992078

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