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Items: 3

1.

A map of cis-regulatory elements and 3D genome structures in zebrafish

(Submitter supplied) The zebrafish has been widely used for the study of human disease and development, as ~70% of the protein-coding genes are conserved between the two species. Annotation of functional control elements of the zebrafish genome, however, has lagged behind that of other model systems such as mouse and Drosophila. Based on multi-omics approaches taken in the ENCODE and Roadmap Epigenomics projects, we performed RNA-seq, ATAC-seq, ChIP-seq and Hi-C experiments in ten adult and two embryonic tissues to generate a comprehensive map of transcriptomes and regulatory elements in the zebrafish Tuebingen reference strain. more...
Organism:
Danio rerio
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other
4 related Platforms
204 Samples
Download data: BED, BW, HIC, NARROWPEAK, TXT
Series
Accession:
GSE134055
ID:
200134055

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina Genome Analyzer (Danio rerio)

Organism:
Danio rerio
13 Series
175 Samples
Download data
Platform
Accession:
GPL10164
ID:
100010164

3.

YueLab-H3K4me3-Muscle-rep2

Organism:
Danio rerio
Source name:
Tissue
Platform:
GPL10164
Series:
GSE134055
Download data
Sample
Accession:
GSM3934941
ID:
303934941

SRA Run Selector

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db=gds|term=GSM3934941[Accession]|query=16|qty=2|blobid=MCID_66df1f873ec0504f9420dcce|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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