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Items: 4

1.

High resolution genome wide DNA analysis on a large panel of Human Embryonic stem cell lines

(Submitter supplied) High resolution genome wide DNA analysis on a large panel of Human Embryonic stem cell lines reveals loss of heterozygosity and copy number variation changes associated with culture and affecting gene expression This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
Expression profiling by array; Genome variation profiling by SNP array; SNP genotyping by SNP array
Platforms:
GPL8238 GPL6801
78 Samples
Download data: CEL, CHP
Series
Accession:
GSE15097
ID:
200015097
2.

Affymetrix SNP 6.0 array data for human embryonic stem cell lines

(Submitter supplied) Pluripotent human embryonic stem cells are studied for potential applications in regenerative cell replacement therapies because of their untransformed nature and unique capacity to self-renew and differentiate. However it is known that adaptation of hESCs occurs on prolonged culture and may be associated with the acquisition of chromosome abnormalities. We report a high resolution DNA SNP 6.0 array analysis showing copy number variation in 17 different hESC lines maintained in different laboratories. more...
Organism:
Homo sapiens
Type:
Genome variation profiling by SNP array; SNP genotyping by SNP array
Platform:
GPL6801
69 Samples
Download data: CEL, CHP
Series
Accession:
GSE15096
ID:
200015096
3.

[GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 (ucsc=hg18; ncbi=NCBI36) August 01, 2012: annotation table updated with netaffx build 32 (ucsc=hg19; ncbi=GRCh37) Protocol: see manufacturer's web site The new Affymetrix® Genome-Wide Human SNP Array 6.0 features 1.8 million genetic markers, including more than 906,600 single nucleotide polymorphisms (SNPs) and more than 946,000 probes for the detection of copy number variation. more...
Organism:
Homo sapiens
404 Series
22859 Samples
Download data
Platform
Accession:
GPL6801
ID:
100006801
4.

Reference HapMap sample NA11832_D07

Organism:
Homo sapiens
Source name:
Reference HapMap sample NA11832_D07
Platform:
GPL6801
Series:
GSE15096 GSE15097
Download data: CEL, CHP
Sample
Accession:
GSM377560
ID:
300377560
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db=gds|term=GSM377560[Accession]|query=1|qty=2|blobid=MCID_667320d86a1d573bf688d190|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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