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Items: 3

1.

fruitENCODE: An encyclopedia of DNA elements for fruit ripening

(Submitter supplied) Fleshy fruits evolved independently multiple times during angiosperm history, including the use of ethylene for the initiation and maintenance of ripening. ENCODE data of 355 transcriptome, 66 accessible chromatin, 160 histone and 45 DNA methylation profiles from eleven fleshy fruit species revealed three types of transcriptional feedback loops controlling ripening. Eudicots peach, papaya and melon evolved their circuits using carpel senescence NAC genes, whereas tomato, apple and pear utilized floral identity MADS genes derived from recent whole-genome-duplications. more...
Organism:
Carica papaya; Prunus persica; Oryza sativa; Fragaria vesca; Pyrus x bretschneideri; Citrullus lanatus; Cucumis melo; Cucumis sativus; Arabidopsis thaliana; Malus domestica; Solanum lycopersicum; Musa acuminata AAA Group; Vitis vinifera
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
18 related Platforms
282 Samples
Download data: BW, NARROWPEAK, TBI, TXT
Series
Accession:
GSE116581
ID:
200116581

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2.

HiSeq X Ten (Solanum lycopersicum)

Organism:
Solanum lycopersicum
8 Series
143 Samples
Download data
Platform
Accession:
GPL24124
ID:
100024124

3.

AC_17DPA_BS-seq

Organism:
Solanum lycopersicum
Source name:
17DPA fruit flesh
Platform:
GPL24124
Series:
GSE116581
Download data: TBI, TXT
Sample
Accession:
GSM3243383
ID:
303243383

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db=gds|term=GSM3243383[Accession]|query=16|qty=14|blobid=MCID_673551cd909f1e7b130cc5d3|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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