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Items: 3

1.

RNA-seq alignment to individualized genomes

(Submitter supplied) The source of most errors in RNA sequencing (RNA-seq) read alignment is in the repetitive structure of the genome and not with the alignment algorithm. Genetic variation away from the reference sequence exacerbates this problem causing reads to be assigned to the wrong location. We developed a method, implemented as the software package Seqnature, to construct the imputed genomes of individuals (individualized genomes) of experimental model organisms including inbred mouse strains and genetically unique outbred animals. more...
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL13112
1086 Samples
Download data: TXT
Series
Accession:
GSE45684
ID:
200045684

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Mus musculus)

Organism:
Mus musculus
8348 Series
188708 Samples
Download data
Platform
Accession:
GPL13112
ID:
100013112

3.

M104_1

Organism:
Mus musculus
Source name:
Liver
Platform:
GPL13112
Series:
GSE45684
Download data
Sample
Accession:
GSM1118151
ID:
301118151

SRA Run Selector

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db=gds|term=GSM1118151[Accession]|query=6|qty=2|blobid=MCID_672ea4a75300667000628ba8|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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