GSM1052290[Accession] - GEO DataSets

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Items: 3

Select item 2000428641.

Evaluation of methods for modeling transcription factor sequence specificity

(Submitter supplied) Genomic analyses often involve scanning for potential transcription-factor (TF) binding sites using models of the sequence specificity of DNA binding proteins. Many approaches have been developed to model and learn a protein’s binding specificity by representing sequence motifs, including the gaps and dependencies between binding-site residues, but these methods have not been systematically compared. more...

Organism:: synthetic construct

Type:: Other

Platform:: GPL11260
172 Samples

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Accession:: GSE42864

ID:: 200042864

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000112602.

Agilent custom ME and HK design array [8mer]

(Submitter supplied) 8mer sequence depicted below is not the sequence represented on the array, but the targeted sequence. Please see the two array design files attached below for array probe sequences. Protocol: This protein binding microarray (PBM) involved binding GST-tagged proteins to custom-designed, double-stranded 44K Agilent microarrays in order to determine their sequence preferences. The method is described in Berger et al., Nature Biotechnology 2006.