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Items: 1 to 20 of 36

1.

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both plant and nematode during susceptible and resistance responses.

(Submitter supplied) Purpose: To understand the molecular mechanisms involved in disease development during plant-nematode interactions. Methods: We have taken a comprehensive transcriptomic approach to investigate the expression of both tomato and RKN genes in tomato roots at five infection time points from susceptible plants (PR: Pusa Ruby) and two infection time points from resistant plants (M36: Transgenic MM line), grown under soil conditions. more...
Organism:
Solanum lycopersicum; Meloidogyne incognita
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22563
34 Samples
Download data: BW, TAB
Series
Accession:
GSE88763
ID:
200088763

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina HiSeq 2000 (Meloidogyne incognita; Solanum lycopersicum)

Organism:
Solanum lycopersicum; Meloidogyne incognita
1 Series
34 Samples
Download data
Platform
Accession:
GPL22563
ID:
100022563

3.

MM Stage 0 rep 2

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345196
ID:
302345196

SRA Run Selector

4.

MM Stage 0 rep 1

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345195
ID:
302345195

SRA Run Selector

5.

M36 Infected Stage 2 rep 2

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345194
ID:
302345194

SRA Run Selector

6.

M36 Infected Stage 2 rep 1

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345193
ID:
302345193

SRA Run Selector

7.

M36 Uninfected Stage 2 rep 2

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345192
ID:
302345192

SRA Run Selector

8.

M36 Uninfected Stage 2 rep 1

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345191
ID:
302345191

SRA Run Selector

9.

M36 Infected Stage 1 rep 2

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345190
ID:
302345190

SRA Run Selector

10.

M36 Infected Stage 1 rep 1

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345189
ID:
302345189

SRA Run Selector

11.

M36 Uninfected Stage 1 rep 2

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345188
ID:
302345188

SRA Run Selector

12.

M36 Uninfected Stage 1 rep 1

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345187
ID:
302345187

SRA Run Selector

13.

M36 Stage 0 rep 2

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345186
ID:
302345186

SRA Run Selector

14.

M36 Stage 0 rep 1

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345185
ID:
302345185

SRA Run Selector

15.

PR Infected Stage 5 rep 2

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345184
ID:
302345184

SRA Run Selector

16.

PR Infected Stage 5 rep 1

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345183
ID:
302345183

SRA Run Selector

17.

PR Uninfected Stage 5 rep 2

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345182
ID:
302345182

SRA Run Selector

18.

PR Uninfected Stage 5 rep 1

Organism:
Solanum lycopersicum; Meloidogyne incognita
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345181
ID:
302345181

SRA Run Selector

19.

PR Infected Stage 4 rep 2

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345180
ID:
302345180

SRA Run Selector

20.

PR Infected Stage 4 rep 1

Organism:
Meloidogyne incognita; Solanum lycopersicum
Source name:
Whole roots
Platform:
GPL22563
Series:
GSE88763
Download data: BW
Sample
Accession:
GSM2345179
ID:
302345179

SRA Run Selector

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