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Items: 19

1.

Comparative total RNA and mRNA sequencing and systems analysis reveals nascent transcriptional response to early HIV-1 infection in a CD4+ T cell line

(Submitter supplied) To systematically investigate early host transcriptional response to HIV-1 infection, including polyadenylated and non-polyadenylated transcripts, we separately sequenced Total RNAs (Total RNA-seq) from HIV-1-infected SupT1 cells, a human CD4+ T cell line. We show many non-polyadenylated RNAs were also differentially expressed upon HIV-1 infection, as expected only detected by Total RNA-seq. Interestingly, we identified 8 times more differentially expressed genes at 12 hour post-infection by Total RNA-seq than by mRNA-seq, mostly protein-coding genes.
Organism:
Homo sapiens; Human immunodeficiency virus 1
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL18160 GPL11154
16 Samples
Download data: TXT
Series
Accession:
GSE53993
ID:
200053993
2.

Illumina HiSeq 2000 (Homo sapiens; Human immunodeficiency virus 1)

Organism:
Homo sapiens; Human immunodeficiency virus 1
3 Series
16 Samples
Download data
Platform
Accession:
GPL18160
ID:
100018160
3.

Illumina HiSeq 2000 (Homo sapiens)

Platform
Accession:
GPL11154
ID:
100011154
4.

HIV_24hr_rep3

Organism:
Homo sapiens; Human immunodeficiency virus 1
Source name:
Total RNA from HIV-infected SUPT1 at 24 hours post-infection
Platform:
GPL18160
Series:
GSE53993
Download data
Sample
Accession:
GSM1305147
ID:
301305147
5.

HIV_24hr_rep2

Organism:
Homo sapiens; Human immunodeficiency virus 1
Source name:
Total RNA from HIV-infected SUPT1 at 24 hours post-infection
Platform:
GPL18160
Series:
GSE53993
Download data
Sample
Accession:
GSM1305146
ID:
301305146
6.

HIV_24hr_rep1

Organism:
Homo sapiens; Human immunodeficiency virus 1
Source name:
Total RNA from HIV-infected SUPT1 at 24 hours post-infection
Platform:
GPL18160
Series:
GSE53993
Download data
Sample
Accession:
GSM1305145
ID:
301305145
7.

HIV_12hr_rep3

Organism:
Homo sapiens; Human immunodeficiency virus 1
Source name:
Total RNA from HIV-infected SUPT1 at 12 hours post-infection
Platform:
GPL18160
Series:
GSE53993
Download data
Sample
Accession:
GSM1305144
ID:
301305144
8.

HIV_12hr_rep2

Organism:
Human immunodeficiency virus 1; Homo sapiens
Source name:
Total RNA from HIV-infected SUPT1 at 12 hours post-infection
Platform:
GPL18160
Series:
GSE53993
Download data
Sample
Accession:
GSM1305143
ID:
301305143
9.

HIV_12hr_rep1

Organism:
Homo sapiens; Human immunodeficiency virus 1
Source name:
Total RNA from HIV-infected SUPT1 at 12 hours post-infection
Platform:
GPL18160
Series:
GSE53993
Download data
Sample
Accession:
GSM1305142
ID:
301305142
10.

UV_24hr_rep3

Organism:
Homo sapiens
Source name:
Total RNA from UV-inactivated virions SUPT1 at 24 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305157
ID:
301305157
11.

UV_24hr_rep1

Organism:
Homo sapiens
Source name:
Total RNA from UV-inactivated virions SUPT1 at 24 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305156
ID:
301305156
12.

UV_12hr_rep3

Organism:
Homo sapiens
Source name:
Total RNA from UV-inactivated virions SUPT1 at 12 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305155
ID:
301305155
13.

UV_12hr_rep2

Organism:
Homo sapiens
Source name:
Total RNA from UV-inactivated virions SUPT1 at 12 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305154
ID:
301305154
14.

UV_12hr_rep1

Organism:
Homo sapiens
Source name:
Total RNA from UV-inactivated virions SUPT1 at 12 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305153
ID:
301305153
15.

Mock_24hr_rep3

Organism:
Homo sapiens
Source name:
Total RNA from mock-infected SUPT1 at 24 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305152
ID:
301305152
16.

Mock_24hr_rep1

Organism:
Homo sapiens
Source name:
Total RNA from mock-infected SUPT1 at 24 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305151
ID:
301305151
17.

Mock_12hr_rep3

Organism:
Homo sapiens
Source name:
Total RNA from mock-infected SUPT1 at 12 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305150
ID:
301305150
18.

Mock_12hr_rep2

Organism:
Homo sapiens
Source name:
Total RNA from mock-infected SUPT1 at 12 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305149
ID:
301305149
19.

Mock_12hr_rep1

Organism:
Homo sapiens
Source name:
Total RNA from mock-infected SUPT1 at 12 hours post-infection
Platform:
GPL11154
Series:
GSE53993
Download data
Sample
Accession:
GSM1305148
ID:
301305148
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