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Items: 18

1.

Ribosome profiling of Murine Embryonic Fibroblasts in the context of different Fbxo4 and hnRNPK status.

(Submitter supplied) Background: SCF-Fbxo4 is suspected to regulate activity of RNA binding protein hnRNPK by non-degradive ubiquitylation. Research strategy: To determine the genomic output of SCF-Fbxo4 - hnRNPK interplay, murine embryonic fibroblasts (MEFs) with different status of hnRNPK/Fbxo4 were subjected to Ribosome profiling. Sequencing was performed on total RNA and RNA protected by ribosomes for each condition.
Organism:
Mus musculus
Type:
Expression profiling by high throughput sequencing; Other
Platform:
GPL21626
16 Samples
Download data: TXT
Series
Accession:
GSE196483
ID:
200196483

PubMed Full text in PMC Similar studies

2.

NextSeq 550 (Mus musculus)

Organism:
Mus musculus
1389 Series
59108 Samples
Download data
Platform
Accession:
GPL21626
ID:
100021626

3.

rS8: MEF_Fbxo4(-/-)+hnRNPK siRNA rep 2 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885029
ID:
305885029

SRA Run Selector

4.

rS7: MEF_Fbxo4(-/-)+hnRNPK siRNA rep 1 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885028
ID:
305885028

SRA Run Selector

5.

rS6: MEF_Fbxo4(-/-)+non_targeting siRNA rep 2 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885027
ID:
305885027

SRA Run Selector

6.

rS5: MEF_Fbxo4(-/-)+non_targeting siRNA rep 1 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885026
ID:
305885026

SRA Run Selector

7.

rS4: MEF_wt+hnRNPK siRNA rep 2 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885025
ID:
305885025

SRA Run Selector

8.

rS3: MEF_wt+hnRNPK siRNA rep 1 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885024
ID:
305885024

SRA Run Selector

9.

rS2: MEF_wt+non_targeting siRNA rep 2 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885023
ID:
305885023

SRA Run Selector

10.

rS1: MEF_wt+non_targeting siRNA rep 1 [RPF]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885022
ID:
305885022

SRA Run Selector

11.

S8: MEF_Fbxo4(-/-)+hnRNPK siRNA rep 2 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885021
ID:
305885021

SRA Run Selector

12.

S7: MEF_Fbxo4(-/-)+hnRNPK siRNA rep 1 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885020
ID:
305885020

SRA Run Selector

13.

S6: MEF_Fbxo4(-/-)+non_targeting siRNA rep 2 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885019
ID:
305885019

SRA Run Selector

14.

S5: MEF_Fbxo4(-/-)+non_targeting siRNA rep 1 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885018
ID:
305885018

SRA Run Selector

15.

S4: MEF_wt+hnRNPK siRNA rep 2 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885017
ID:
305885017

SRA Run Selector

16.

S3: MEF_wt+hnRNPK siRNA rep 1 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885016
ID:
305885016

SRA Run Selector

17.

S2: MEF_wt+non_targeting siRNA rep 2 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885015
ID:
305885015

SRA Run Selector

18.

S1: MEF_wt+non_targeting siRNA rep 1 [RNA]

Organism:
Mus musculus
Source name:
C57BL/6
Platform:
GPL21626
Series:
GSE196483
Download data
Sample
Accession:
GSM5885014
ID:
305885014

SRA Run Selector

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