GEO DataSets

(Submitter supplied) An Infinium microarray platform (GPL28271, HorvathMammalMethylChip40) was used to generate DNA methylation data from many tissues of the naked mole rat We generated DNA methylation data from n=289 tissues. All tissues except for skin biopsies and blood were obtained from frozen tissue collection that were euthanized for other studies. Skin biopsies (2 mm punch) were collected from the backs of the animals under local anesthesia. more...

Organism:

Rattus norvegicus; Homo sapiens; Mus musculus; Heterocephalus glaber

Type:

Methylation profiling by array

Platform:

GPL28271

289 Samples

Download data: IDAT

(Submitter supplied) Developed in the labs of Steve Horvath and Jason Ernst. The mammalian array platform applies to ALL mammals (humans, mouse, rat, sheep, horses, pigs, etc.). The array design is similar to the Illumina Infinium 450K array but it contains fewer up to 37492 CpGs. Additional material can be found on the Github page https://github.com/shorvath/MammalianMethylationConsortium/ A vignette on using the mammal methylation array with SeSAMe is available from https://bioconductor.org/packages/release/bioc/vignettes/sesame/inst/doc/mammal.html. more...

Organism:

Homo sapiens; Mus musculus; Rattus norvegicus

47 Series

22261 Samples

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