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Items: 12

1.

RNA-seq after DDX41 knockdown in U2OS cells

(Submitter supplied) Purpose: Investigating transcriptome changes after depletion of DDX41. Methods: mRNA profiles after DDX41 knockdown compared to control knockdown were generated in 5 biological replicates. Samples were mapped using STAR (v2.7) against hg38 with the Gencode annotation. Reads per gene were counted using featureCounts (v.1.6). The differential expression analysis was performed using Bioconductor (v2.46)/DESeq2 (v1.26). more...
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18573
10 Samples
Download data: BW, TSV
Series
Accession:
GSE168171
ID:
200168171

PubMed Full text in PMC Similar studies Analyze with GEO2RSRA Run Selector

2.

Illumina NextSeq 500 (Homo sapiens)

Organism:
Homo sapiens
12540 Series
342241 Samples
Download data
Platform
Accession:
GPL18573
ID:
100018573

3.

U20S_siDDX41_RNA-seq_5

Organism:
Homo sapiens
Source name:
U20S_DDX41 knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133350
ID:
305133350

SRA Run Selector

4.

U20S_siDDX41_RNA-seq_4

Organism:
Homo sapiens
Source name:
U20S_DDX41 knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133349
ID:
305133349

SRA Run Selector

5.

U20S_siDDX41_RNA-seq_3

Organism:
Homo sapiens
Source name:
U20S_DDX41 knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133348
ID:
305133348

SRA Run Selector

6.

U20S_siDDX41_RNA-seq_2

Organism:
Homo sapiens
Source name:
U20S_DDX41 knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133347
ID:
305133347

SRA Run Selector

7.

U20S_siDDX41_RNA-seq_1

Organism:
Homo sapiens
Source name:
U20S_DDX41 knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133346
ID:
305133346

SRA Run Selector

8.

U20S_siCtrl_RNA-seq_5

Organism:
Homo sapiens
Source name:
U20S_control knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133345
ID:
305133345

SRA Run Selector

9.

U20S_siCtrl_RNA-seq_4

Organism:
Homo sapiens
Source name:
U20S_control knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133344
ID:
305133344

SRA Run Selector

10.

U20S_siCtrl_RNA-seq_3

Organism:
Homo sapiens
Source name:
U20S_control knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133343
ID:
305133343

SRA Run Selector

11.

U20S_siCtrl_RNA-seq_2

Organism:
Homo sapiens
Source name:
U20S_control knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133342
ID:
305133342

SRA Run Selector

12.

U20S_siCtrl_RNA-seq_1

Organism:
Homo sapiens
Source name:
U20S_control knockdown
Platform:
GPL18573
Series:
GSE168171 GSE168173
Download data: BW, TSV
Sample
Accession:
GSM5133341
ID:
305133341

SRA Run Selector

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