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Items: 1 to 20 of 37

1.

Transcription-dependent domain-scale 3D genome organization in dinoflagellates

(Submitter supplied) Dinoflagellate chromosomes represent a unique evolutionary experiment, as they exist in a permanently condensed, liquid crystalline state, are not packaged by histones, and contain genes organized into polycistronic arrays, with minimal transcriptional regulation. We analyze the 3D genome of {Breviolum minutum}, and find large topological domains without chromatin loops, demarcated by convergent gene array boundaries (``dinoTADs’’). more...
Organism:
Breviolum minutum
Type:
Other
Platform:
GPL28838
35 Samples
Download data: HIC
Series
Accession:
GSE153950
ID:
200153950

PubMed Full text in PMC Similar studies SRA Run Selector

2.

Illumina NextSeq 500 (Breviolum minutum)

Organism:
Breviolum minutum
1 Series
35 Samples
Download data
Platform
Accession:
GPL28838
ID:
100028838

3.

L1866-Triptolide_time_course_96h_washout_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1866-Triptolide_time_course_96h_washout_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173893
ID:
305173893

SRA Run Selector

4.

L1865-Amanitin_time_course_96h_washout_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1865-Amanitin_time_course_96h_washout_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173892
ID:
305173892

SRA Run Selector

5.

L1864-NT_time_course_96h_washout_Hi-C

Organism:
Breviolum minutum
Source name:
L1864-NT_time_course_96h_washout_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173891
ID:
305173891

SRA Run Selector

6.

L1863-Triptolide_time_course_48h_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1863-Triptolide_time_course_48h_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173890
ID:
305173890

SRA Run Selector

7.

L1862-Amanitin_time_course_48h_high_dose_Hi-C

Organism:
Breviolum minutum
Source name:
L1862-Amanitin_time_course_48h_high_dose_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173889
ID:
305173889

SRA Run Selector

8.

L1861-NT_time_course_48h_Hi-C

Organism:
Breviolum minutum
Source name:
L1861-NT_time_course_48h_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173888
ID:
305173888

SRA Run Selector

9.

L1860-NT_time_course_0h_Hi-C

Organism:
Breviolum minutum
Source name:
L1860-NT_time_course_0h_Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173887
ID:
305173887

SRA Run Selector

10.

L1859-Triptolide_time_course_8h_NT_intactHi-C

Organism:
Breviolum minutum
Source name:
L1859-Triptolide_time_course_8h_NT_intactHi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173886
ID:
305173886

SRA Run Selector

11.

L1334-SSB01-a_amanitin_high-48h-Hi-C 2

Organism:
Breviolum minutum
Source name:
L1334-SSB01-a_amanitin_high-48h-Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173885
ID:
305173885

SRA Run Selector

12.

L1332-SSB01-a_amanitin-0h-Hi-C 2

Organism:
Breviolum minutum
Source name:
L1332-SSB01-a_amanitin-0h-Hi-C
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM5173884
ID:
305173884

SRA Run Selector

13.

L1353-Triptolide_time_course_48h_high_dose-Hi-C

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659018
ID:
304659018

SRA Run Selector

14.

L1352-Triptolide_time_course_48h_normal_dose-Hi-C

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659017
ID:
304659017

SRA Run Selector

15.

L1351-Triptolide_time_course_48h_NT-HiC

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659016
ID:
304659016

SRA Run Selector

16.

L1350-Triptolide_time_course_24h_high_dose-Hi-C

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659015
ID:
304659015

SRA Run Selector

17.

L1349-Triptolide_time_course_24h_normal_dose-Hi-C

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659014
ID:
304659014

SRA Run Selector

18.

L1348-Triptolide_time_course_24h_NT-HiC

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659013
ID:
304659013

SRA Run Selector

19.

L1347-Triptolide_time_course_8h_high_dose-Hi-C

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659012
ID:
304659012

SRA Run Selector

20.

L1346-Triptolide_time_course_8h_normal_dose-Hi-C

Organism:
Breviolum minutum
Source name:
SSBO1 cells
Platform:
GPL28838
Series:
GSE153950
Download data: HIC
Sample
Accession:
GSM4659011
ID:
304659011

SRA Run Selector

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