GSE138705[Accession] - GEO DataSets - NCBI

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Select item 2001387051.

Multiplex genome editing uncovers a class of non-CG methylation specific for GC-rich regions in rice

(Submitter supplied) We report the BS-Seq, mRNA-Seq and sRNA-Seq of the homozygous mutants and wide type in rice T1 plants, including single and multiple knock-out mutants. We found the major DNA methyltransfereases in regulating DNA methylation of rice.

Organism:: Oryza sativa

Type:: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platform:: GPL24468
64 Samples

Download data: TXT, WIG

Series

Accession:: GSE138705

ID:: 200138705

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000244682.

HiSeq X Ten (Oryza sativa)

Organism:: Oryza sativa

81 Series
1248 Samples

Platform

Accession:: GPL24468

ID:: 100024468

Select item 3052938273.

24_BS_Osdrm2/drm3/cmt2/cmt3a_T1

Organism:: Oryza sativa

Source name:: Osdrm2/drm3/cmt2/cmt3a mutant

Platform:: GPL24468
Series:: GSE138705

Download data: WIG

Sample

Accession:: GSM5293827

ID:: 305293827

SRA Run Selector

Select item 3041165454.

10_sRNA_Oscmt3a/drm2_T1

Organism:: Oryza sativa

Source name:: Oscmt3a/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116545

ID:: 304116545

SRA Run Selector

Select item 3041165445.

9_sRNA_Oscmt2/drm2_T1

Organism:: Oryza sativa

Source name:: Oscmt2/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116544

ID:: 304116544

SRA Run Selector

Select item 3041165436.

8_sRNA_Oscmt2/cmt3a_T1

Organism:: Oryza sativa

Source name:: Oscmt2/cmt3a mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116543

ID:: 304116543

SRA Run Selector

Select item 3041165427.

7_sRNA_Oscmt3a_T1

Organism:: Oryza sativa

Source name:: Oscmt3a mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116542

ID:: 304116542

SRA Run Selector

Select item 3041165418.

6_sRNA_Oscmt2_T1

Organism:: Oryza sativa

Source name:: Oscmt2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116541

ID:: 304116541

SRA Run Selector

Select item 3041165409.

5_sRNA_Oscmt2/cmt3a/drm2_T1

Organism:: Oryza sativa

Source name:: Oscmt2/cmt3a/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116540

ID:: 304116540

SRA Run Selector

Select item 30411653910.

4_sRNA_Oscmt2/cmt3a/drm2_T1

Organism:: Oryza sativa

Source name:: Oscmt2/cmt3a/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116539

ID:: 304116539

SRA Run Selector

Select item 30411653811.

3_sRNA_Osdrm2_T1

Organism:: Oryza sativa

Source name:: Osdrm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116538

ID:: 304116538

SRA Run Selector

Select item 30411653712.

Organism:: Oryza sativa

Source name:: Wide type

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116537

ID:: 304116537

SRA Run Selector

Select item 30411653613.

Organism:: Oryza sativa

Source name:: Wide type

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116536

ID:: 304116536

SRA Run Selector

Select item 30411653514.

30_mRNA_Oscmt3a/drm2_T1_r3

Organism:: Oryza sativa

Source name:: Oscmt3a/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116535

ID:: 304116535

SRA Run Selector

Select item 30411653415.

29_mRNA_Oscmt3a/drm2_T1_r2

Organism:: Oryza sativa

Source name:: Oscmt3a/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116534

ID:: 304116534

SRA Run Selector

Select item 30411653316.

28_mRNA_Oscmt3a/drm2_T1_r1

Organism:: Oryza sativa

Source name:: Oscmt3a/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116533

ID:: 304116533

SRA Run Selector

Select item 30411653217.

27_mRNA_Oscmt2/drm2_T1_r3

Organism:: Oryza sativa

Source name:: Oscmt2/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116532

ID:: 304116532

SRA Run Selector

Select item 30411653118.

26_mRNA_Oscmt2/drm2_T1_r2

Organism:: Oryza sativa

Source name:: Oscmt2/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116531

ID:: 304116531

SRA Run Selector

Select item 30411653019.

25_mRNA_Oscmt2/drm2_T1_r1

Organism:: Oryza sativa

Source name:: Oscmt2/drm2 mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116530

ID:: 304116530

SRA Run Selector

Select item 30411652920.

24_mRNA_Oscmt2/cmt3a_T1_r3

Organism:: Oryza sativa

Source name:: Oscmt2/cmt3a mutant

Platform:: GPL24468
Series:: GSE138705

Download data: TXT

Sample

Accession:: GSM4116529

ID:: 304116529

SRA Run Selector

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GSE138705[Accession] (66)
GEO DataSets
"Orabacterium" (2)
Nucleotide
GSE18251 (8)
GEO DataSets
LOC107949925 [Gossypium hirsutum]
LOC107949925 [Gossypium hirsutum]
Gene ID:107949925

Gene

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