GEO DataSets

(Submitter supplied) Chromosome conformation capture (3C) technologies have identified topologically associating domains (TADs) and larger A/B compartments as two salient structural features of eukaryotic chromosomes. These structures are sculpted by the combined actions of transcription and structural maintenance of chromosomes (SMC) superfamily proteins. Bacterial chromosomes fold into TAD-like chromosomal interaction domains (CIDs) but do not display A/B compartment-type organization. more...

Organism:

Sulfolobus islandicus; Sulfolobus acidocaldarius

Type:

Expression profiling by high throughput sequencing; Other

Platforms:

GPL26275 GPL26274

31 Samples

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(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Sulfolobus acidocaldarius

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL26274

12 Samples

Download data: TXT

(Submitter supplied) We report the regulon of a GntR-like regulator from the archaeon Sulfolobus acidocaldarius by looking at differentially expressed genes comparing a YtrASa overexpression strain with its isogenic wild ype

Organism:

Sulfolobus acidocaldarius

Type:

Expression profiling by high throughput sequencing

Platform:

GPL26274

6 Samples

Download data: TXT

(Submitter supplied) We report the characterization of GntR-like regulator in the Archaeon Sulfolobus acidocaldarius by looking at the genome wide interaction map of the protein in vivo

Organism:

Sulfolobus acidocaldarius

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL26274

6 Samples

Download data: TXT

(Submitter supplied) The three-dimensional organization of chromosomes can have a profound impact on their replication and expression. The chromosomes of higher eukaryotes possess discrete compartments that are characterized by differing transcriptional activities. Contrastingly, most bacterial chromosomes have simpler organization with local domains, the boundaries of which are influenced by gene expression. Numerous studies have revealed that the higher-order architectures of bacterial and eukaryotic chromosomes are dependent on the actions of Structural Maintenance of Chromosomes (SMC) superfamily protein complexes, in particular the near-universal condensin complex. more...

Organism:

Sulfolobus acidocaldarius; Sulfolobus islandicus

Type:

Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

4 related Platforms

94 Samples

Download data: TXT