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Items: 3

1.

Transcriptome analysis of cassava, Manihot esculenta variety TM12

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Manihot esculenta
Type:
Expression profiling by high throughput sequencing
4 related Platforms
26 Samples
Download data: BED, BEDGRAPH
Series
Accession:
GSE225366
ID:
200225366
2.

3'-end sequencing of transcripts from cassava, Manihot esculenta variety TM12

(Submitter supplied) Quant-Seq (3'-end sequencing technique) of mRNAs to identify the 3'-ends of transcripts to analyse the 3'-UTR that were used with other multi-omics data to build gene model annotation of Cassava.
Organism:
Manihot esculenta
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21635
8 Samples
Download data: BEDGRAPH
Series
Accession:
GSE225363
ID:
200225363
3.

Widespread natural variation of DNA methylation within angiosperms

(Submitter supplied) DNA methylation is a chemical modification of DNA that can be faithfully inherited across generations in flowering plant genomes. Failure to properly maintain DNA methylation can lead to epigenetic variation and transposon reactivation. Plant genomes are dynamic, spanning large ranges in size and there is an interplay between the genome and epigenome in shaping one another. To understand the variation in genomic patterning of DNA methylation between species, we compared methylomes of numerous diverse angiosperm species. more...
Organism:
Medicago truncatula; Setaria viridis; Sorghum bicolor; Vitis vinifera; Theobroma cacao; Brassica rapa; Malus domestica; Ricinus communis; Brachypodium distachyon; Lotus japonicus; Citrus x clementina; Cannabis sativa; Cucumis sativus; Prunus persica; Manihot esculenta; Panicum virgatum; Fragaria vesca; Eucalyptus grandis; Populus trichocarpa; Erythranthe guttata; Eutrema salsugineum; Beta vulgaris; Panicum hallii
Type:
Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
30 related Platforms
34 Samples
Download data: TSV
Series
Accession:
GSE79526
ID:
200079526
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Supplemental Content

db=gds|term=GPL21635[RGSE]|query=12|qty=24|blobid=MCID_6723fdcfbc40331ebe79cf86|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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