Cytisus haynaldi - GEO DataSets

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Select item 2002137541.

Small RNA profiling of aster yellows infected Catharanthus roseus plants

(Submitter supplied) Aster yellows phytoplasma strain Hyd35 (16SrI-B) in micropropagated periwinkle shoots in collection was used to produce infected plants in pots that were separated according to the diverse symptomatology i.e. phyllody and witches’ broom. Small RNA high-throughput sequencing (HTS) was then used to determine the small RNA pattern of these plants. Bioinformatics analysis revealed the presence of expression changes of different miRNA classes and the presence of phytoplasma derived small RNAs. more...

Organism:: Catharanthus roseus

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL18652
9 Samples

Download data: TXT

Series

Accession:: GSE213754

ID:: 200213754

PubMed Full text in PMC Similar studies

Select item 2002268172.

Clonal propagation of Moniliophthora roreri and the emergence of unique lineages with distinct genomes during range expansion

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Moniliophthora roreri; Moniliophthora perniciosa

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL33217 GPL33216 GPL33215
48 Samples

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Series

Accession:: GSE226817

ID:: 200226817

Select item 2002268133.

RNAseq analysis of M. perniciosa expression in different conditions

(Submitter supplied) The basidiomycete Moniliophthora roreri causes frosty pod rot of cacao (Theobroma cacao) in the Western hemisphere. M. roreri is considered asexual and haploid throughout its hemibiotrophic lifecycle. To understand the processes driving genome modification, using long-read sequencing technology we sequenced and assembled five high quality M. roreri genomes out of a collection of ninety-nine isolates collected throughout the pathogen's range. more...

Organism:: Moniliophthora perniciosa

Type:: Expression profiling by high throughput sequencing

Platform:: GPL33215
21 Samples

Download data: FASTA, TXT

Series

Accession:: GSE226813

ID:: 200226813

Select item 2000420874.

Digital gene expression (DGE) of PaWB phytoplasma-infected Paulownia witches

(Submitter supplied) Here we performed a transcriptomic study on PaWB phytoplasma-infected Paulownia sp. using Solexa/Illumina’s high-throughput digital gene expression (DGE) system. 4 DGE libraries (from 2 virus-infected samples and 2 healthy samples) were constructed, and the gene expression variations between the PaWB phytoplasma-infected (diseased) sample and the corresponding healthy sample were compared. Thousands of differentially expressed genes were obtained by the comparison, and KEGG pathway analysis of these genes suggested that many biological processes were responded to PaWB infection.

Organism:: Paulownia

Type:: Expression profiling by high throughput sequencing

Platform:: GPL16253
4 Samples

Download data: TXT

Series

Accession:: GSE42087

ID:: 200042087

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000442795.

Phytoplasma-responsive small RNAs in Mexican lime trees

(Submitter supplied) Background: Witches’ broom disease of Mexican lime (Citrus aurantifolia L.), which is caused by the phytoplasma “Candidatus Phytoplasma aurantifolia”, is a devastating disease that results in significant economic losses. Plants adapt to abiotic stresses by regulating gene expression at the transcriptional and post-transcriptional levels. MicroRNAs (miRNAs) are a recently identified family of molecules that regulate plant responses to environmental stresses through post-transcriptional gene silencing. more...

Organism:: Citrus x aurantiifolia

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL16710
2 Samples

Download data: TXT

Series

Accession:: GSE44279

ID:: 200044279

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000096276.

Comparison between saprotrophic and biotrophic-like mycelia of cacao WBD causal agent Moniliophthora perniciosa II

(Submitter supplied) Moniliophthora perniciosa is the causal agent of cacao Witche´s broom disease. This disease has been causing extensive damages to Brazilian cacao plantation, especially in Southern Bahia. Using glass slides microarrays, we analyzed the expression profile of 3872 whole genome shotgun reads from M. perniciosa genome, comparing two stages of development (Biotrophic-like mycelia and saprotrophic mycelia). more...