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Functional Genomics Studies

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Select item 2001400551.

Transcriptome-SIP of hydrocarbon degrader adaption under dual electron acceptor availability in aquifer sediments

(Submitter supplied) We demonstrate the feasibility of total RNA-SIP in experiments where microbes from a hydrocarbon-contaminated aquifer were studied in microcosms with 13C-labelled-toluene to understand their adaptation to the simultaneous availability of low levels of different electron acceptors. SIP successfully resolved the involvement of microaerobic vs. aerobic and anaerobic populations. Under microoxic, nitrate-amended conditions hydrocarbon degradation was actually stimulated, but transcripts of denitrification showed no signs of 13C-labelling. more...

Organism:: aquifer metagenome

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27730
29 Samples

Download data: BIOM, TXT

Series

Accession:: GSE140055

ID:: 200140055

SRA Run Selector

Select item 3041522502.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152250

ID:: 304152250

SRA Run Selector

Select item 3041522493.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152249

ID:: 304152249

SRA Run Selector

Select item 3041522484.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152248

ID:: 304152248

SRA Run Selector

Select item 3041522475.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152247

ID:: 304152247

SRA Run Selector

Select item 3041522466.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152246

ID:: 304152246

SRA Run Selector

Select item 3041522457.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152245

ID:: 304152245

SRA Run Selector

Select item 3041522448.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152244

ID:: 304152244

SRA Run Selector

Select item 3041522439.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152243

ID:: 304152243

SRA Run Selector

Select item 30415224210.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152242

ID:: 304152242

SRA Run Selector

Select item 30415224111.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152241

ID:: 304152241

SRA Run Selector

Select item 30415224012.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152240

ID:: 304152240

SRA Run Selector

Select item 30415223913.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152239

ID:: 304152239

SRA Run Selector

Select item 30415223814.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152238

ID:: 304152238

SRA Run Selector

Select item 30415223715.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152237

ID:: 304152237

SRA Run Selector

Select item 30415223616.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152236

ID:: 304152236

SRA Run Selector

Select item 30415223517.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152235

ID:: 304152235

SRA Run Selector

Select item 30415223418.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152234

ID:: 304152234

SRA Run Selector

Select item 30415223319.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152233

ID:: 304152233

SRA Run Selector

Select item 30415223220.

Organism:: aquifer metagenome

Source name:: Aquifer sediment (Environmental microbial community)

Platform:: GPL27730
Series:: GSE140055

Sample

Accession:: GSM4152232

ID:: 304152232

SRA Run Selector

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(txid1704045[Organism]) AND gds_sra[filter] (30)
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Mus musculus acyl-Coenzyme A dehydrogenase family, member 8 (Acad8), mRNA; nucle...
Mus musculus acyl-Coenzyme A dehydrogenase family, member 8 (Acad8), mRNA; nuclear gene for mitochondrial product
gi|118403321|ref|NM_025862.2|

Nucleotide
Nucleotide Links for Protein (Select 815690080) (25)
Nucleotide
txid2785239[Organism:noexp] (52)
Protein
BHLHE22 basic helix-loop-helix family member e22 [Homo sapiens]
BHLHE22 basic helix-loop-helix family member e22 [Homo sapiens]
Gene ID:27319

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