(txid167487[Organism:exp]) AND gds_sra[filter] - GEO DataSets - NCBI

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Select item 2002178521.

Transcriptomic analysis of leaves and leaf cells from the medicinal plant Catharanthus roseus

(Submitter supplied) The goal of this study is to investigate differential transcription profiles of leaf material/cells accumulating different levels of alkaloids in the anticancer plant Catharanthus roseus.

Organism:: Catharanthus roseus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL32853 GPL32852
35 Samples

Download data: FASTA, TXT

Series

Accession:: GSE217852

ID:: 200217852

PubMed Full text in PMC Similar studies

Select item 2002137542.

Small RNA profiling of aster yellows infected Catharanthus roseus plants

(Submitter supplied) Aster yellows phytoplasma strain Hyd35 (16SrI-B) in micropropagated periwinkle shoots in collection was used to produce infected plants in pots that were separated according to the diverse symptomatology i.e. phyllody and witches’ broom. Small RNA high-throughput sequencing (HTS) was then used to determine the small RNA pattern of these plants. Bioinformatics analysis revealed the presence of expression changes of different miRNA classes and the presence of phytoplasma derived small RNAs. more...

Organism:: Catharanthus roseus

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL18652
9 Samples

Download data: TXT

Series

Accession:: GSE213754

ID:: 200213754

PubMed Full text in PMC Similar studies

Select item 2001461773.

PAW-plasma activated water-triggers plant defence responses

(Submitter supplied) Nowadays one of the main challenges is moving towards an eco-sustainable agriculture, able to preserve the food production through a reduced use of pesticides. The current global food sustenance by intensive agriculture mainly based on economic crop monocultures drastically reduces the biodiversity increasing the yield losses due to biotic and abiotic stress. To try to ensure yield stability also enhancing the plant resistance responses to promote an eco-sustainable management of plant diseases, a technology based on plasma activated water (PAW), characterized by the production of reactive oxygen and nitrogen species, was tested. more...

Organism:: Catharanthus roseus

Type:: Non-coding RNA profiling by high throughput sequencing

Platform:: GPL18652
6 Samples

Download data: TXT

Series

Accession:: GSE146177

ID:: 200146177

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000573264.

Catharanthus Transcriptome and Gene Expression

(Submitter supplied) In this study, we aim to present a global transcriptome analysis of medicinal plant, Catharanthus roseus. We generated about 343 million high-quality reads from three tissues (leaf, root and flower) using Illumina platform. We performed an optimized de novo assembly of the reads and estimated transcript abundance in different tissue samples. The transcriptome dynamics was studied by differential gene expression analyses among tissue samples.

Organism:: Catharanthus roseus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL18652
3 Samples

Download data: TXT

Series

Accession:: GSE57326

ID:: 200057326

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 3067276545.

Leaves, pair 3, outdoors, biol rep 3

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727654

ID:: 306727654

SRA Run Selector

Select item 3067276536.

Leaves, pair 3, outdoors, biol rep 2

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727653

ID:: 306727653

SRA Run Selector

Select item 3067276527.

Leaves, pair 3, outdoors, biol rep 1

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727652

ID:: 306727652

SRA Run Selector

Select item 3067276518.

Leaves, pair 3, indoors, biol rep 3

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727651

ID:: 306727651

SRA Run Selector

Select item 3067276509.

Leaves, pair 3, indoors, biol rep 2

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727650

ID:: 306727650

SRA Run Selector

Select item 30672764910.

Leaves, pair 3, indoors, biol rep 1

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727649

ID:: 306727649

SRA Run Selector

Select item 30672764811.

Leaves, pair 2, outdoors, biol rep 3

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727648

ID:: 306727648

SRA Run Selector

Select item 30672764712.

Leaves, pair 2, outdoors, biol rep 2

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727647

ID:: 306727647

SRA Run Selector

Select item 30672764613.

Leaves, pair 2, outdoors, biol rep 1

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727646

ID:: 306727646

SRA Run Selector

Select item 30672764514.

Leaves, pair 2, indoors, biol rep 3

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727645

ID:: 306727645

SRA Run Selector

Select item 30672764415.

Leaves, pair 2, indoors, biol rep 2

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727644

ID:: 306727644

SRA Run Selector

Select item 30672764316.

Leaves, pair 2, indoors, biol rep 1

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32853
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727643

ID:: 306727643

SRA Run Selector

Select item 30672766817.

Leaf protoplasts, total, biol rep 3

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32852
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727668

ID:: 306727668

SRA Run Selector

Select item 30672766718.

Leaf protoplasts, total, biol rep 2

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32852
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727667

ID:: 306727667

SRA Run Selector

Select item 30672766619.

Leaf protoplasts, total, biol rep 1

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32852
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727666

ID:: 306727666

SRA Run Selector

Select item 30672766520.

Leaf protoplasts, mesophyll, biol rep 3

Organism:: Catharanthus roseus

Source name:: leaf

Platform:: GPL32852
Series:: GSE217852

Download data: TXT

Sample

Accession:: GSM6727665

ID:: 306727665

SRA Run Selector

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(txid167487[Organism:exp]) AND gds_sra[filter] (57)
GEO DataSets
Homo sapiens BAC clone RP11-434N4 from 2, complete sequence
Homo sapiens BAC clone RP11-434N4 from 2, complete sequence
gi|22002308|gb|AC091485.8||gnl|wugs 1-434N4

Nucleotide
ribosomal protein L23 (chloroplast) [Alniphyllum fortunei]
ribosomal protein L23 (chloroplast) [Alniphyllum fortunei]
gi|2515409248|gb|WIL98352.1|

Protein
NADH-plastoquinone oxidoreductase subunit 6 (chloroplast) [Alniphyllum fortunei]
NADH-plastoquinone oxidoreductase subunit 6 (chloroplast) [Alniphyllum fortunei]
gi|2515409238|gb|WIL98342.1|

Protein
Homo sapiens phospholipase C, delta 1, mRNA (cDNA clone MGC:51904 IMAGE:5769665)...
Homo sapiens phospholipase C, delta 1, mRNA (cDNA clone MGC:51904 IMAGE:5769665), complete cds
gi|30046471|gb|BC050382.1|

Nucleotide

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