| | LOC129937586, NPHP3 +2 more (S59L) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 | |
| | NPHP3, NPHP3-ACAD11 (E1156*) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 | |
| | LOC129937586, NPHP3 +2 more (G24fs) | Deletion (frameshift variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 | |
| | NPHP3, NPHP3-ACAD11 (W587*) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis 3 +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Deletion (intron variant) | NPHP3-related Meckel-like syndrome +3 more | |
| | NPHP3, NPHP3-ACAD11 (K999Q) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (G1300R) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more (A52V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (N1097S) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | NPHP3, NPHP3-ACAD11 (M768L) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (R1259*) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | GPathogenic/Likely pathogenic |
| | NPHP3, NPHP3-ACAD11 (R157fs) | Deletion (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +3 more | GConflicting classifications of pathogenicity |
| | LOC129937586, NPHP3 +2 more (K75R) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (D320Y) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +3 more | |
| | NPHP3, NPHP3-ACAD11 (R724C) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (M1fs) | Duplication (non-coding transcript variant +2 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (I755V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (C1145R) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related disorder +5 more | |
| | LOC129937586, NPHP3 +2 more (R62H) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (E26K) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 (E1013D) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | NPHP3, NPHP3-ACAD11 (I771V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (splice donor variant) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (G1069R) | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +4 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | not provided +4 more | |
| | | Single nucleotide variant (intron variant) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | NPHP3, NPHP3-ACAD11 (L1253V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +2 more | |
| | LOC129937586, NPHP3 +2 more (G54E) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (E1278V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3-ACAD11, NPHP3 (I343T) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (H703Q) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | NPHP3, NPHP3-ACAD11 +1 more (E116K) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 (E492D) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 (R1125Q) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 (Q286E) | Single nucleotide variant (missense variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (Y441C) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | NPHP3, NPHP3-ACAD11 (P1174L) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (L70P) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +4 more | |
| | NPHP3-ACAD11, NPHP3 (I625V) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | NPHP3, NPHP3-ACAD11 (A1046G) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (E833Q) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | LOC129937586, NPHP3 +2 more (R39L) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +4 more | |
| | NPHP3, NPHP3-ACAD11 (P979L) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related disorder +2 more | GPathogenic/Likely pathogenic |
| | NPHP3, NPHP3-ACAD11 (L889P) | Single nucleotide variant (non-coding transcript variant +1 more) | Inborn genetic diseases +4 more | |
| | NPHP3, NPHP3-ACAD11 (Y509H) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (G719S) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related disorder +5 more | |
| | NPHP3, NPHP3-ACAD11 (G505R) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (P1303S) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | LOC129937586, NPHP3 +2 more (G63E) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +4 more | |
| | NPHP3, NPHP3-ACAD11 (L1109R) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | NPHP3, NPHP3-ACAD11 (V1269M) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 (L1241S) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3-ACAD11, NPHP3 (R951*) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | GPathogenic/Likely pathogenic |
| | NPHP3, NPHP3-ACAD11 (C741Y) | Single nucleotide variant (non-coding transcript variant +1 more) | Inborn genetic diseases +4 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Nephronophthisis 3 +3 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Nephronophthisis 3 +2 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Renal-hepatic-pancreatic dysplasia 1 +2 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Nephronophthisis 3 +2 more | |
| | | Single nucleotide variant (intron variant) | Nephronophthisis 3 +2 more | |
| | | Single nucleotide variant (intron variant) | NPHP3-related Meckel-like syndrome +3 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Renal-hepatic-pancreatic dysplasia 1 +2 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Renal-hepatic-pancreatic dysplasia 1 +2 more | GConflicting classifications of pathogenicity |
| | NPHP3, NPHP3-ACAD11 (K167T) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +3 more | |
| | NPHP3, NPHP3-ACAD11 (S586C) | Single nucleotide variant (non-coding transcript variant +1 more) | Renal-hepatic-pancreatic dysplasia 1 +3 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Nephronophthisis 3 +2 more | |
| | | Single nucleotide variant (intron variant) | Renal-hepatic-pancreatic dysplasia 1 +3 more | GConflicting classifications of pathogenicity |
| | NPHP3, NPHP3-ACAD11 (I618S) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +2 more | |
| | NPHP3, NPHP3-ACAD11 (L1096F) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +2 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Nephronophthisis 3 +2 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Renal-hepatic-pancreatic dysplasia 1 +2 more | |
| | | Single nucleotide variant (3 prime UTR variant) | Renal-hepatic-pancreatic dysplasia 1 +2 more | |
| | NPHP3, NPHP3-ACAD11 (V631I) | Single nucleotide variant (missense variant) | Nephronophthisis +3 more | |
| | NPHP3-ACAD11, NPHP3 (P659L) | Single nucleotide variant (missense variant) | Nephronophthisis +4 more | |
| | NPHP3, NPHP3-ACAD11 (D344E) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | LOC129937586, NPHP3 +2 more (A49V) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (I619M) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | NPHP3, NPHP3-ACAD11 (S1217R) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +3 more | |
| | | Single nucleotide variant (splice acceptor variant) | not provided +4 more | |
| | NPHP3, NPHP3-ACAD11 (T593A) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +3 more | |
| | NPHP3, NPHP3-ACAD11 (I755L) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +3 more | |
| | NPHP3, NPHP3-ACAD11 (R397H) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +4 more | GConflicting classifications of pathogenicity |