ClinVar for Gene (Select 158038) - ClinVar - NCBI

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	Variation	Gene (Protein Change)	Type (Consequence)	Condition	Classification, Review status
Select item 3290789	NM_001258282.3(LINGO2):c.1391G>A (p.Gly464Asp)	LINGO2 (G464D)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3290788	NM_001258282.3(LINGO2):c.373T>A (p.Phe125Ile)	LINGO2 (F125I)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3290787	NM_001258282.3(LINGO2):c.1789G>A (p.Gly597Arg)	LINGO2 (G597R)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3290785	NM_001258282.3(LINGO2):c.148G>T (p.Ala50Ser)	LINGO2 (A50S)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3290784	NM_001258282.3(LINGO2):c.1406A>G (p.Glu469Gly)	LINGO2 (E469G)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3119001	NM_001258282.3(LINGO2):c.881C>G (p.Ser294Cys)	LINGO2 (S294C)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3119000	NM_001258282.3(LINGO2):c.53T>G (p.Val18Gly)	LINGO2 (V18G)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3118999	NM_001258282.3(LINGO2):c.284A>G (p.Asn95Ser)	LINGO2 (N95S)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3118998	NM_001258282.3(LINGO2):c.176C>T (p.Thr59Ile)	LINGO2 (T59I)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3118997	NM_001258282.3(LINGO2):c.1533G>A (p.Ala511=)	LINGO2	Single nucleotide variant (synonymous variant)	not specified	GLikely benign
Select item 3118996	NM_001258282.3(LINGO2):c.1349G>C (p.Arg450Pro)	LINGO2 (R450P)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3118995	NM_001258282.3(LINGO2):c.1166G>A (p.Arg389His)	LINGO2 (R389H)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 3063071	GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3	DMAC1, DMRT1 +769 more	Copy number gain	not specified	GPathogenic
Select item 3025483	NM_001258282.3(LINGO2):c.12G>A (p.Thr4=)	LINGO2	Single nucleotide variant (synonymous variant)	not provided	GLikely benign
Select item 2685348	GRCh37/hg19 9p21.1(chr9:28698217-29061610)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 2685347	GRCh37/hg19 9p21.1(chr9:28257648-28585960)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 2684569	GRCh37/hg19 9p24.3-13.1(chr9:1475882-38771831)x3	CREB3, STOML2 +188 more	Copy number gain	not provided	GPathogenic
Select item 2659138	NM_001258282.3(LINGO2):c.1695G>A (p.Val565=)	LINGO2	Single nucleotide variant (synonymous variant)	not provided	GLikely benign
Select item 2612752	NM_001258282.3(LINGO2):c.908A>G (p.His303Arg)	LINGO2 (H303R)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2611443	NM_001258282.3(LINGO2):c.1004C>G (p.Thr335Ser)	LINGO2 (T335S)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2599115	NM_001258282.3(LINGO2):c.427A>C (p.Ile143Leu)	LINGO2 (I143L)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2591222	NM_001258282.3(LINGO2):c.1438A>G (p.Met480Val)	LINGO2 (M480V)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2548984	NM_001258282.3(LINGO2):c.14C>T (p.Ala5Val)	LINGO2 (A5V)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2491459	NM_001258282.3(LINGO2):c.332G>A (p.Arg111His)	LINGO2 (R111H)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2480872	NM_001258282.3(LINGO2):c.1748C>T (p.Pro583Leu)	LINGO2 (P583L)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2395050	NM_001258282.3(LINGO2):c.1097T>C (p.Ile366Thr)	LINGO2 (I366T)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2379705	NM_001258282.3(LINGO2):c.1724A>G (p.Asn575Ser)	LINGO2 (N575S)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2350973	NM_001258282.3(LINGO2):c.1594A>G (p.Asn532Asp)	LINGO2 (N532D)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2322630	NM_001258282.3(LINGO2):c.358G>C (p.Val120Leu)	LINGO2 (V120L)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2319865	NM_001258282.3(LINGO2):c.1730T>C (p.Ile577Thr)	LINGO2 (I577T)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2312431	NM_001258282.3(LINGO2):c.486C>A (p.Asp162Glu)	LINGO2 (D162E)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2297188	NM_001258282.3(LINGO2):c.377C>T (p.Thr126Met)	LINGO2 (T126M)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2242436	NM_001258282.3(LINGO2):c.642C>G (p.Asn214Lys)	LINGO2 (N214K)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 2207213	NM_001258282.3(LINGO2):c.308A>G (p.Asn103Ser)	LINGO2 (N103S)	Single nucleotide variant (missense variant)	not specified	GUncertain significance
Select item 1809025	GRCh37/hg19 9p21.2-21.1(chr9:27780310-28605043)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 1808925	GRCh37/hg19 9p21.2-21.1(chr9:27670414-28070014)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 1807980	GRCh37/hg19 9p21.2-21.1(chr9:27257570-31635608)x1	C9orf72, EQTN +2 more	Copy number loss	not provided	GUncertain significance
Select item 1711101	GRCh37/hg19 9p24.3-q34.11(chr9:203861-131603223)x3	ADAMTSL1, CEP78 +596 more	Copy number gain	See cases	GPathogenic
Select item 1707628	GRCh37/hg19 9p24.3-13.1(chr9:48827-39154913)x3	ACER2, ACO1 +199 more	Copy number gain	Syndromic anorectal malformation	GLikely pathogenic
Select item 1704647	GRCh37/hg19 9p24.3-13.3(chr9:203861-35903398)x3	ACER2, ACO1 +169 more	Copy number gain	MISSED ABORTION	GPathogenic
Select item 1703688	GRCh37/hg19 9p22.1-q33.1(chr9:19356861-119513311)	ATOSB, ATP6V1G1 +417 more	Copy number loss	Distal tetrasomy 15q	GUncertain significance
Select item 1703576	GRCh37/hg19 9p24.3-q13(chr9:203861-68342786)	ACER2, ACO1 +204 more	Copy number gain	Bradycardia	GPathogenic
Select item 1703570	GRCh37/hg19 9p24.3-q13(chr9:203861-67986965)	ACER2, ACO1 +204 more	Copy number gain	Tetrasomy 9p	GPathogenic
Select item 1527518	GRCh37/hg19 9p21.2-21.1(chr9:27348149-29866026)	C9orf72, LINGO2 +1 more	Copy number gain	not specified	GUncertain significance
Select item 1527516	GRCh37/hg19 9p21.3-21.1(chr9:22003967-30712948)	C9orf72, CAAP1 +13 more	Copy number loss	not specified	GUncertain significance
Select item 1527495	GRCh37/hg19 9p24.3-13.3(chr9:676264-33743670)	ACER2, ACO1 +114 more	Copy number gain	not specified	GPathogenic
Select item 1527491	GRCh37/hg19 9p24.3-q34.3(chr9:353349-141020389)	ANKRD18A, ANKRD18B +768 more	Copy number gain	not specified	GPathogenic
Select item 1527488	GRCh37/hg19 9p24.3-q21.32(chr9:203861-84155399)	SPATA31A5, SPATA31A6 +257 more	Copy number gain	not specified	GPathogenic
Select item 1527487	GRCh37/hg19 9p24.3-q21.11(chr9:203861-69002883)	ACER2, ACO1 +205 more	Copy number gain	not specified	GPathogenic
Select item 1340565	GRCh37/hg19 9p21.1(chr9:28905419-28981481)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 1340103	GRCh37/hg19 9p21.2(chr9:27408331-27983086)x3	C9orf72, LINGO2 +1 more	Copy number gain	not provided	GUncertain significance
Select item 980342	GRCh37/hg19 9p21.1(chr9:28737913-29702414)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 980341	GRCh37/hg19 9p21.1(chr9:28937299-29198547)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 980340	GRCh37/hg19 9p21.1(chr9:29129023-29202522)x1	LINGO2	Copy number loss	not provided	GLikely benign
Select item 980339	GRCh37/hg19 9p21.1(chr9:28492136-28818016)x1	LINGO2	Copy number loss	not provided	GLikely benign
Select item 974737	NM_001258282.3(LINGO2):c.-228+12976_-227-20514del	LINGO2	Deletion (intron variant)	Megacolon	GUncertain significance
Select item 815258	GRCh37/hg19 9p21.1(chr9:28885984-29088636)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 815257	GRCh37/hg19 9p21.1(chr9:28620371-28975706)x1	LINGO2	Copy number loss	not provided	GLikely benign
Select item 815256	GRCh37/hg19 9p21.1(chr9:28183564-31526964)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 815255	GRCh37/hg19 9p21.1(chr9:28130036-28378182)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 815254	GRCh37/hg19 9p21.2-21.1(chr9:27745383-28346159)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 815190	GRCh37/hg19 9p24.3-q21.11(chr9:203861-70984588)x3	ACER2, ACO1 +213 more	Copy number gain	not provided	GPathogenic
Select item 725600	NM_001258282.3(LINGO2):c.973G>C (p.Val325Leu)	LINGO2 (V325L)	Single nucleotide variant (missense variant)	not provided	GBenign
Select item 694460	NC_000009.11:g.12246100_101559378inv	ANKS6, ANP32B +326 more	Inversion	Abnormal chromosome morphology +1 more	GLikely pathogenic
Select item 689254	GRCh37/hg19 9p21.1(chr9:28586142-28766607)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 689235	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 689184	GRCh37/hg19 9p21.1(chr9:28739852-28916553)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 689152	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 689134	GRCh37/hg19 9p21.1(chr9:28593228-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688944	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688928	GRCh37/hg19 9p21.1(chr9:28189976-28347399)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688923	GRCh37/hg19 9p21.1(chr9:29057538-29244165)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688776	GRCh37/hg19 9p21.1(chr9:28588574-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688673	GRCh37/hg19 9p21.1(chr9:28593228-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688668	GRCh37/hg19 9p21.1(chr9:28635167-28680869)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688656	GRCh37/hg19 9p21.1(chr9:28588574-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688565	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688454	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 688287	GRCh37/hg19 9p21.1(chr9:28513869-28812497)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688232	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688220	GRCh37/hg19 9p21.1(chr9:28593134-28766607)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688203	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688111	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688018	GRCh37/hg19 9p21.1(chr9:28586142-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 688012	GRCh37/hg19 9p21.1(chr9:28603176-28769160)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 687779	GRCh37/hg19 9p21.1(chr9:29122523-29244165)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 687692	GRCh37/hg19 9p21.1(chr9:28586142-28761784)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 687476	GRCh37/hg19 9p24.3-13.1(chr9:203861-38472979)x3	CER1, CHMP5 +193 more	Copy number gain	not provided	GPathogenic
Select item 686919	GRCh37/hg19 9p21.1(chr9:28975710-29298962)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 686910	GRCh37/hg19 9p21.1(chr9:28698216-28725108)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 686885	GRCh37/hg19 9p21.1(chr9:28689311-28738160)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 685666	GRCh37/hg19 9p21.1(chr9:29178486-29284164)x3	LINGO2	Copy number gain	not provided	GUncertain significance
Select item 685520	GRCh37/hg19 9p21.1(chr9:28620371-28742801)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 685460	GRCh37/hg19 9p21.1(chr9:28673985-28824856)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 685319	GRCh37/hg19 9p21.1(chr9:28693056-28795502)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 685312	GRCh37/hg19 9p21.1(chr9:28588574-28766228)x1	LINGO2	Copy number loss	not provided	GUncertain significance
Select item 685192	GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3	MSMP, OR13D1 +769 more	Copy number gain	not provided	GPathogenic
Select item 685107	GRCh37/hg19 9p24.3-q13(chr9:203861-67986965)x3	CNTNAP3B, CREB3 +204 more	Copy number gain	not provided	GPathogenic
Select item 625636	GRCh37/hg19 9p24.3-13.1(chr9:214309-39156958)	GBA2, MPDZ +195 more	Copy number gain	not provided	GPathogenic
Select item 617751	Single allele	APBA1, APTX +185 more	Complex	Glioma	GLikely pathogenic

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