ClinVar Genomic variation as it relates to human health
NM_001375505.1(MAP2):c.2523G>A (p.Glu841=)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001375505.1(MAP2):c.2523G>A (p.Glu841=)
Variation ID: 789159 Accession: VCV000789159.5
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 2q34 2: 209694693 (GRCh38) [ NCBI UCSC ] 2: 210559417 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Dec 17, 2019 Sep 29, 2024 Dec 31, 2019 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001375505.1:c.2523G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001362434.1:p.Glu841= synonymous NM_001039538.2:c.455-5584G>A intron variant NM_001363910.2:c.2511G>A NP_001350839.1:p.Glu837= synonymous NM_001363911.2:c.2511G>A NP_001350840.1:p.Glu837= synonymous NM_001363913.2:c.455-5584G>A intron variant NM_001375474.1:c.455-5584G>A intron variant NM_001375493.1:c.455-5584G>A intron variant NM_001375494.1:c.455-5584G>A intron variant NM_001375495.1:c.455-1849G>A intron variant NM_001375496.1:c.455-5587G>A intron variant NM_001375497.1:c.452-5584G>A intron variant NM_001375498.1:c.452-1849G>A intron variant NM_001375499.1:c.455-5584G>A intron variant NM_001375500.1:c.2511G>A NP_001362429.1:p.Glu837= synonymous NM_001375501.1:c.2769G>A NP_001362430.1:p.Glu923= synonymous NM_001375502.1:c.2520G>A NP_001362431.1:p.Glu840= synonymous NM_001375503.1:c.2754G>A NP_001362432.1:p.Glu918= synonymous NM_001375504.1:c.2523G>A NP_001362433.1:p.Glu841= synonymous NM_001375506.1:c.2523G>A NP_001362435.1:p.Glu841= synonymous NM_001375507.1:c.2511G>A NP_001362436.1:p.Glu837= synonymous NM_001375508.1:c.455-5584G>A intron variant NM_001375509.1:c.544+1967G>A intron variant NM_001375510.1:c.455-1849G>A intron variant NM_001375526.1:c.2523G>A NP_001362455.1:p.Glu841= synonymous NM_001375527.1:c.2523G>A NP_001362456.1:p.Glu841= synonymous NM_001375528.1:c.2511G>A NP_001362457.1:p.Glu837= synonymous NM_001375529.1:c.452-5584G>A intron variant NM_001375530.1:c.455-5587G>A intron variant NM_001375531.1:c.2769G>A NP_001362460.1:p.Glu923= synonymous NM_001375532.1:c.455-5587G>A intron variant NM_001375533.1:c.452-5584G>A intron variant NM_001375534.1:c.2523G>A NP_001362463.1:p.Glu841= synonymous NM_001375535.1:c.697+3845G>A intron variant NM_001375536.1:c.455-1849G>A intron variant NM_001375537.1:c.2769G>A NP_001362466.1:p.Glu923= synonymous NM_001375538.1:c.455-1849G>A intron variant NM_001375539.1:c.2757G>A NP_001362468.1:p.Glu919= synonymous NM_001375540.1:c.452-1849G>A intron variant NM_001375541.1:c.455-2224G>A intron variant NM_001375542.1:c.452-5587G>A intron variant NM_001375543.1:c.2523G>A NP_001362472.1:p.Glu841= synonymous NM_001375544.1:c.2520G>A NP_001362473.1:p.Glu840= synonymous NM_001375545.1:c.2511G>A NP_001362474.1:p.Glu837= synonymous NM_001375546.1:c.2511G>A NP_001362475.1:p.Glu837= synonymous NM_001375548.1:c.2508G>A NP_001362477.1:p.Glu836= synonymous NM_001375551.1:c.2049G>A NP_001362480.1:p.Glu683= synonymous NM_001375552.1:c.2049G>A NP_001362481.1:p.Glu683= synonymous NM_001375553.1:c.-17-1849G>A intron variant NM_001375554.1:c.-17-1849G>A intron variant NM_001375555.1:c.2049G>A NP_001362484.1:p.Glu683= synonymous NM_001375556.1:c.2049G>A NP_001362485.1:p.Glu683= synonymous NM_001375557.1:c.2049G>A NP_001362486.1:p.Glu683= synonymous NM_001375558.1:c.2049G>A NP_001362487.1:p.Glu683= synonymous NM_001375559.1:c.2049G>A NP_001362488.1:p.Glu683= synonymous NM_001375583.1:c.455-5584G>A intron variant NM_002374.4:c.2523G>A NP_002365.3:p.Glu841= synonymous NM_031845.3:c.455-5584G>A intron variant NM_031847.3:c.455-5584G>A intron variant NC_000002.12:g.209694693G>A NC_000002.11:g.210559417G>A NG_052836.1:g.275647G>A - Protein change
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- Other names
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- Canonical SPDI
- NC_000002.12:209694692:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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0.00040 (A)
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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1000 Genomes Project 30x 0.00031
Exome Aggregation Consortium (ExAC) 0.00284
1000 Genomes Project 0.00040
Trans-Omics for Precision Medicine (TOPMed) 0.00100
The Genome Aggregation Database (gnomAD) 0.00159
The Genome Aggregation Database (gnomAD), exomes 0.00239
NHLBI Exome Sequencing Project (ESP) Exome Variant Server 0.00085
- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
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Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| MAP2 | - | - |
GRCh38 GRCh37 |
120 | 146 | |
Conditions - Germline
| Condition
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The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Benign (2) |
criteria provided, multiple submitters, no conflicts
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Dec 31, 2019 | RCV000971727.5 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
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This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Benign
(Dec 31, 2019)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: unknown
Allele origin:
germline
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Labcorp Genetics (formerly Invitae), Labcorp
Accession: SCV001119391.2
First in ClinVar: Dec 17, 2019 Last updated: May 04, 2020 |
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Benign
(-)
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criteria provided, single submitter
Method: not provided
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not provided
(Unknown mechanism)
Affected status: yes
Allele origin:
germline
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Breakthrough Genomics, Breakthrough Genomics
Accession: SCV005240935.1
First in ClinVar: Sep 29, 2024 Last updated: Sep 29, 2024 |
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Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for rs150391168 ...
HelpRecord last updated Sep 29, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.