TCERG1: BP4, BP7
ClinVar Genomic variation as it relates to human health
NM_001382548.1(TCERG1):c.642G>A (p.Gln214=)
Germline
Classification
Help
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
(1)
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Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
Likely benign
1
criteria provided, single submitter
Somatic
No data submitted for somatic clinical impact
Somatic
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001382548.1(TCERG1):c.642G>A (p.Gln214=)
Variation ID: 2655884 Accession: VCV002655884.10
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 5q32 5: 146459087 (GRCh38) [ NCBI UCSC ] 5: 145838650 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Nov 20, 2023 Oct 20, 2024 Feb 1, 2023 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001382548.1:c.642G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001369477.1:p.Gln214= synonymous NM_001040006.2:c.642G>A NP_001035095.1:p.Gln214= synonymous NM_001400077.1:c.642G>A NP_001387006.1:p.Gln214= synonymous NM_001400082.1:c.585G>A NP_001387011.1:p.Gln195= synonymous NM_001400083.1:c.577-13G>A intron variant NM_001400084.1:c.642G>A NP_001387013.1:p.Gln214= synonymous NM_001400085.1:c.642G>A NP_001387014.1:p.Gln214= synonymous NM_001400092.1:c.582G>A NP_001387021.1:p.Gln194= synonymous NM_001400093.1:c.642G>A NP_001387022.1:p.Gln214= synonymous NM_001400094.1:c.642G>A NP_001387023.1:p.Gln214= synonymous NM_001400095.1:c.642G>A NP_001387024.1:p.Gln214= synonymous NM_001400096.1:c.558+84G>A intron variant NM_001400097.1:c.642G>A NP_001387026.1:p.Gln214= synonymous NM_001400098.1:c.594+48G>A intron variant NM_001400099.1:c.642G>A NP_001387028.1:p.Gln214= synonymous NM_006706.4:c.642G>A NP_006697.2:p.Gln214= synonymous NR_174389.1:n.659G>A non-coding transcript variant NR_174390.1:n.659G>A non-coding transcript variant NR_174391.1:n.659G>A non-coding transcript variant NR_174406.1:n.662G>A non-coding transcript variant NR_174407.1:n.662G>A non-coding transcript variant NR_174408.1:n.659G>A non-coding transcript variant NR_174409.1:n.659G>A non-coding transcript variant NR_174410.1:n.659G>A non-coding transcript variant NR_174411.1:n.659G>A non-coding transcript variant NR_174412.1:n.659G>A non-coding transcript variant NR_174413.1:n.659G>A non-coding transcript variant NR_174414.1:n.749G>A non-coding transcript variant NR_174415.1:n.659G>A non-coding transcript variant NR_174416.1:n.659G>A non-coding transcript variant NR_174417.1:n.659G>A non-coding transcript variant NR_174418.1:n.659G>A non-coding transcript variant NR_174419.1:n.659G>A non-coding transcript variant NR_174420.1:n.659G>A non-coding transcript variant NR_174421.1:n.659G>A non-coding transcript variant NR_174422.1:n.659G>A non-coding transcript variant NR_174423.1:n.659G>A non-coding transcript variant NR_174424.1:n.659G>A non-coding transcript variant NR_174425.1:n.659G>A non-coding transcript variant NR_174426.1:n.659G>A non-coding transcript variant NR_174427.1:n.659G>A non-coding transcript variant NR_174428.1:n.659G>A non-coding transcript variant NR_174429.1:n.659G>A non-coding transcript variant NR_174430.1:n.659G>A non-coding transcript variant NR_174431.1:n.659G>A non-coding transcript variant NR_174432.1:n.659G>A non-coding transcript variant NR_174433.1:n.659G>A non-coding transcript variant NR_174434.1:n.659G>A non-coding transcript variant NR_174435.1:n.659G>A non-coding transcript variant NR_174436.1:n.659G>A non-coding transcript variant NR_174437.1:n.659G>A non-coding transcript variant NR_174438.1:n.659G>A non-coding transcript variant NR_174439.1:n.659G>A non-coding transcript variant NR_174440.1:n.659G>A non-coding transcript variant NR_174441.1:n.659G>A non-coding transcript variant NR_174442.1:n.659G>A non-coding transcript variant NR_174443.1:n.659G>A non-coding transcript variant NR_174444.1:n.659G>A non-coding transcript variant NR_174445.1:n.659G>A non-coding transcript variant NR_174446.1:n.659G>A non-coding transcript variant NR_174447.1:n.659G>A non-coding transcript variant NR_174448.1:n.659G>A non-coding transcript variant NR_174449.1:n.659G>A non-coding transcript variant NR_174450.1:n.659G>A non-coding transcript variant NR_174451.1:n.659G>A non-coding transcript variant NR_174452.1:n.659G>A non-coding transcript variant NR_174453.1:n.659G>A non-coding transcript variant NR_174454.1:n.659G>A non-coding transcript variant NC_000005.10:g.146459087G>A NC_000005.9:g.145838650G>A - Protein change
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- Other names
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- Canonical SPDI
- NC_000005.10:146459086:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| TCERG1 | - | - |
GRCh38 GRCh37 |
51 | 67 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
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The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Likely benign (1) |
criteria provided, single submitter
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Feb 1, 2023 | RCV003429868.10 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
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The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Likely benign
(Feb 01, 2023)
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criteria provided, single submitter
Method: clinical testing
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not provided
Affected status: yes
Allele origin:
germline
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CeGaT Center for Human Genetics Tuebingen
Accession: SCV004157275.10
First in ClinVar: Nov 20, 2023 Last updated: Oct 20, 2024 |
Comment:
TCERG1: BP4, BP7
Number of individuals with the variant: 1
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Comment:
Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Comment:
TCERG1: BP4, BP7
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated Oct 20, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.