The c.1958C>T (p.P653L) alteration is located in exon 10 (coding exon 10) of the CAPRIN2 gene. This alteration results from a C to T substitution at nucleotide position 1958, causing the proline (P) at amino acid position 653 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
ClinVar Genomic variation as it relates to human health
NM_001385503.1(CAPRIN2):c.1715C>T (p.Pro572Leu)
Germline
Classification
Help
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
(1)
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Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
Uncertain significance
1
criteria provided, single submitter
Somatic
No data submitted for somatic clinical impact
Somatic
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_001385503.1(CAPRIN2):c.1715C>T (p.Pro572Leu)
Variation ID: 2406576 Accession: VCV002406576.2
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 12p11.21 12: 30724399 (GRCh38) [ NCBI UCSC ] 12: 30877333 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Feb 8, 2023 May 1, 2024 Sep 16, 2021 - HGVS
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... more HGVS ... less HGVSNucleotide Protein Molecular
consequenceNM_001385503.1:c.1715C>T MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_001372432.1:p.Pro572Leu missense NM_001002259.3:c.1958C>T NP_001002259.1:p.Pro653Leu missense NM_001206856.3:c.1958C>T NP_001193785.1:p.Pro653Leu missense NM_001319842.2:c.959C>T NP_001306771.1:p.Pro320Leu missense NM_001319843.2:c.1958C>T NP_001306772.1:p.Pro653Leu missense NM_001319844.2:c.1715C>T NP_001306773.1:p.Pro572Leu missense NM_001319845.2:c.1715C>T NP_001306774.1:p.Pro572Leu missense NM_001319846.2:c.1715C>T NP_001306775.1:p.Pro572Leu missense NM_001385498.1:c.1958C>T NP_001372427.1:p.Pro653Leu missense NM_001385499.1:c.1958C>T NP_001372428.1:p.Pro653Leu missense NM_001385500.1:c.1958C>T NP_001372429.1:p.Pro653Leu missense NM_001385501.1:c.1715C>T NP_001372430.1:p.Pro572Leu missense NM_001385502.1:c.1715C>T NP_001372431.1:p.Pro572Leu missense NM_001385504.1:c.1715C>T NP_001372433.1:p.Pro572Leu missense NM_001385505.1:c.1715C>T NP_001372434.1:p.Pro572Leu missense NM_001385506.1:c.1715C>T NP_001372435.1:p.Pro572Leu missense NM_001385507.1:c.1715C>T NP_001372436.1:p.Pro572Leu missense NM_001385508.1:c.1715C>T NP_001372437.1:p.Pro572Leu missense NM_001385509.1:c.1715C>T NP_001372438.1:p.Pro572Leu missense NM_001385510.1:c.1715C>T NP_001372439.1:p.Pro572Leu missense NM_001385511.1:c.1715C>T NP_001372440.1:p.Pro572Leu missense NM_001385512.1:c.1715C>T NP_001372441.1:p.Pro572Leu missense NM_001385513.1:c.1715C>T NP_001372442.1:p.Pro572Leu missense NM_001385514.1:c.1715C>T NP_001372443.1:p.Pro572Leu missense NM_001385515.1:c.1715C>T NP_001372444.1:p.Pro572Leu missense NM_001385516.1:c.1958C>T NP_001372445.1:p.Pro653Leu missense NM_001385518.1:c.1958C>T NP_001372447.1:p.Pro653Leu missense NM_001385519.1:c.1715C>T NP_001372448.1:p.Pro572Leu missense NM_001385520.1:c.1715C>T NP_001372449.1:p.Pro572Leu missense NM_001385521.1:c.1715C>T NP_001372450.1:p.Pro572Leu missense NM_001385522.1:c.1715C>T NP_001372451.1:p.Pro572Leu missense NM_001385523.1:c.1715C>T NP_001372452.1:p.Pro572Leu missense NM_001385524.1:c.1715C>T NP_001372453.1:p.Pro572Leu missense NM_001385525.1:c.1715C>T NP_001372454.1:p.Pro572Leu missense NM_001385526.1:c.1715C>T NP_001372455.1:p.Pro572Leu missense NM_001385527.1:c.1715C>T NP_001372456.1:p.Pro572Leu missense NM_001385528.1:c.959C>T NP_001372457.1:p.Pro320Leu missense NM_001385529.1:c.959C>T NP_001372458.1:p.Pro320Leu missense NM_001385531.1:c.959C>T NP_001372460.1:p.Pro320Leu missense NM_001385532.1:c.959C>T NP_001372461.1:p.Pro320Leu missense NM_001385533.1:c.959C>T NP_001372462.1:p.Pro320Leu missense NM_001385534.1:c.959C>T NP_001372463.1:p.Pro320Leu missense NM_001385535.1:c.1715C>T NP_001372464.1:p.Pro572Leu missense NM_001385537.1:c.959C>T NP_001372466.1:p.Pro320Leu missense NM_001385538.1:c.890C>T NP_001372467.1:p.Pro297Leu missense NM_001385539.1:c.959C>T NP_001372468.1:p.Pro320Leu missense NM_001385540.1:c.959C>T NP_001372469.1:p.Pro320Leu missense NM_001385541.1:c.959C>T NP_001372470.1:p.Pro320Leu missense NM_001385542.1:c.959C>T NP_001372471.1:p.Pro320Leu missense NM_001385543.1:c.890C>T NP_001372472.1:p.Pro297Leu missense NM_001385544.1:c.890C>T NP_001372473.1:p.Pro297Leu missense NM_001385545.1:c.959C>T NP_001372474.1:p.Pro320Leu missense NM_001385546.1:c.890C>T NP_001372475.1:p.Pro297Leu missense NM_001385547.1:c.959C>T NP_001372476.1:p.Pro320Leu missense NM_001385548.1:c.959C>T NP_001372477.1:p.Pro320Leu missense NM_001385549.1:c.959C>T NP_001372478.1:p.Pro320Leu missense NM_001385550.1:c.959C>T NP_001372479.1:p.Pro320Leu missense NM_001385551.1:c.959C>T NP_001372480.1:p.Pro320Leu missense NM_001385552.1:c.959C>T NP_001372481.1:p.Pro320Leu missense NM_001385553.1:c.959C>T NP_001372482.1:p.Pro320Leu missense NM_001385554.1:c.959C>T NP_001372483.1:p.Pro320Leu missense NM_001385557.1:c.959C>T NP_001372486.1:p.Pro320Leu missense NM_001385559.1:c.959C>T NP_001372488.1:p.Pro320Leu missense NM_023925.5:c.1958C>T NP_076414.2:p.Pro653Leu missense NM_032156.5:c.1958C>T NP_115532.3:p.Pro653Leu missense NR_038177.2:n.2626C>T NR_169636.1:n.1656C>T non-coding transcript variant NR_169637.1:n.1656C>T non-coding transcript variant NR_169638.1:n.1774C>T non-coding transcript variant NR_169639.1:n.1942C>T non-coding transcript variant NR_169640.1:n.1942C>T non-coding transcript variant NR_169641.1:n.1942C>T non-coding transcript variant NR_169643.1:n.1726C>T non-coding transcript variant NC_000012.12:g.30724399G>A NC_000012.11:g.30877333G>A NG_029557.2:g.35116C>T - Protein change
- P572L, P297L, P320L, P653L
- Other names
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- Canonical SPDI
- NC_000012.12:30724398:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
Help
The frequency of the allele represented by this VCV record.
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- Links
Genes
| Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
|---|---|---|---|---|---|---|
| HI score
Help
The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
Help
The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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| CAPRIN2 | - | - |
GRCh38 GRCh37 |
68 | 96 | |
Conditions - Germline
| Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
Help
The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
Help
The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
|---|---|---|---|---|
| Uncertain significance (1) |
criteria provided, single submitter
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Sep 16, 2021 | RCV004239764.1 |
Submissions - Germline
| Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
Help
This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(Sep 16, 2021)
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criteria provided, single submitter
Method: clinical testing
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not specified
Affected status: unknown
Allele origin:
germline
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Ambry Genetics
Accession: SCV003748087.2
First in ClinVar: Feb 07, 2023 Last updated: May 01, 2024 |
Comment:
The c.1958C>T (p.P653L) alteration is located in exon 10 (coding exon 10) of the CAPRIN2 gene. This alteration results from a C to T substitution … (more)
The c.1958C>T (p.P653L) alteration is located in exon 10 (coding exon 10) of the CAPRIN2 gene. This alteration results from a C to T substitution at nucleotide position 1958, causing the proline (P) at amino acid position 653 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. (less)
|
Comment:
Germline Functional Evidence
| There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Comment:
The c.1958C>T (p.P653L) alteration is located in exon 10 (coding exon 10) of the CAPRIN2 gene. This alteration results from a C to T substitution at nucleotide position 1958, causing the proline (P) at amino acid position 653 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Citations for germline classification of this variant
Help| There are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated Oct 27, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.