ClinVar Genomic variation as it relates to human health
NM_004260.4(RECQL4):c.3581C>A (p.Ala1194Asp)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_004260.4(RECQL4):c.3581C>A (p.Ala1194Asp)
Variation ID: 2104614 Accession: VCV002104614.2
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 8q24.3 8: 144511477 (GRCh38) [ NCBI UCSC ] 8: 145736860 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Feb 8, 2023 Feb 20, 2024 Oct 8, 2022 - HGVS
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Nucleotide Protein Molecular
consequenceNM_004260.4:c.3581C>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_004251.4:p.Ala1194Asp missense NM_001413017.1:c.3287C>A NP_001399946.1:p.Ala1096Asp missense NM_001413018.1:c.3383C>A NP_001399947.1:p.Ala1128Asp missense NM_001413019.1:c.3656C>A NP_001399948.1:p.Ala1219Asp missense NM_001413020.1:c.3485C>A NP_001399949.1:p.Ala1162Asp missense NM_001413021.1:c.2510C>A NP_001399950.1:p.Ala837Asp missense NM_001413022.1:c.2510C>A NP_001399951.1:p.Ala837Asp missense NM_001413023.1:c.2585C>A NP_001399952.1:p.Ala862Asp missense NM_001413024.1:c.2510C>A NP_001399953.1:p.Ala837Asp missense NM_001413025.1:c.3452C>A NP_001399954.1:p.Ala1151Asp missense NM_001413027.1:c.2444C>A NP_001399956.1:p.Ala815Asp missense NM_001413028.1:c.2510C>A NP_001399957.1:p.Ala837Asp missense NM_001413029.1:c.3230C>A NP_001399958.1:p.Ala1077Asp missense NM_001413030.1:c.2444C>A NP_001399959.1:p.Ala815Asp missense NM_001413031.1:c.2312C>A NP_001399960.1:p.Ala771Asp missense NM_001413032.1:c.2444C>A NP_001399961.1:p.Ala815Asp missense NM_001413033.1:c.3449C>A NP_001399962.1:p.Ala1150Asp missense NM_001413034.1:c.2510C>A NP_001399963.1:p.Ala837Asp missense NM_001413035.1:c.2510C>A NP_001399964.1:p.Ala837Asp missense NM_001413036.1:c.3590C>A NP_001399965.1:p.Ala1197Asp missense NM_001413037.1:c.2378C>A NP_001399966.1:p.Ala793Asp missense NM_001413038.1:c.2312C>A NP_001399967.1:p.Ala771Asp missense NM_001413039.1:c.3551C>A NP_001399968.1:p.Ala1184Asp missense NM_001413040.1:c.2510C>A NP_001399969.1:p.Ala837Asp missense NM_001413041.1:c.2519C>A NP_001399970.1:p.Ala840Asp missense NM_001413042.1:c.2480C>A NP_001399971.1:p.Ala827Asp missense NM_001413043.1:c.2114C>A NP_001399972.1:p.Ala705Asp missense NR_182090.1:n.3488C>A NR_182091.1:n.3569C>A NR_182092.1:n.3625C>A NC_000008.11:g.144511477G>T NC_000008.10:g.145736860G>T NG_016430.2:g.11350C>A LRG_277:g.11350C>A LRG_277t1:c.3581C>A LRG_277p1:p.Ala1194Asp - Protein change
- A1077D, A1151D, A1184D, A827D, A1096D, A1128D, A1162D, A705D, A815D, A1194D, A1197D, A1219D, A862D, A1150D, A771D, A793D, A837D, A840D
- Other names
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- Canonical SPDI
- NC_000008.11:144511476:G:T
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
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The frequency of the allele represented by this VCV record.
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- Links
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
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The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
Help
The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
Help
The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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RECQL4 | - | - |
GRCh38 GRCh37 |
4466 | 4835 |
Conditions - Germline
Condition
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The condition for this variant-condition (RCV) record in ClinVar. |
Classification
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The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
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The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
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The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Uncertain significance (1) |
criteria provided, single submitter
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Oct 8, 2022 | RCV003041735.2 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
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The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
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The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
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This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(Oct 08, 2022)
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criteria provided, single submitter
Method: clinical testing
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Baller-Gerold syndrome
Affected status: unknown
Allele origin:
germline
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Invitae
Accession: SCV003318935.2
First in ClinVar: Feb 07, 2023 Last updated: Feb 20, 2024 |
Comment:
Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. In summary, the … (more)
Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals affected with RECQL4-related conditions. This sequence change replaces alanine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 1194 of the RECQL4 protein (p.Ala1194Asp). This variant is not present in population databases (gnomAD no frequency). (less)
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpThere are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated Feb 20, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.