ClinVar Genomic variation as it relates to human health
NM_006765.4(TUSC3):c.798G>A (p.Val266=)
The aggregate germline classification for this variant, typically for a monogenic or Mendelian disorder as in the ACMG/AMP guidelines, or for response to a drug. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the aggregate classification.
Stars represent the aggregate review status, or the level of review supporting the aggregate germline classification for this VCV record. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. The number of submissions which contribute to this review status is shown in parentheses.
No data submitted for somatic clinical impact
No data submitted for oncogenicity
Variant Details
- Identifiers
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NM_006765.4(TUSC3):c.798G>A (p.Val266=)
Variation ID: 1761500 Accession: VCV001761500.2
- Type and length
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single nucleotide variant, 1 bp
- Location
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Cytogenetic: 8p22 8: 15673836 (GRCh38) [ NCBI UCSC ] 8: 15531345 (GRCh37) [ NCBI UCSC ]
- Timeline in ClinVar
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First in ClinVar Help The date this variant first appeared in ClinVar with each type of classification.
Last submission Help The date of the most recent submission for each type of classification for this variant.
Last evaluated Help The most recent date that a submitter evaluated this variant for each type of classification.
Germline Nov 29, 2022 May 1, 2024 Apr 10, 2018 - HGVS
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Nucleotide Protein Molecular
consequenceNM_006765.4:c.798G>A MANE Select Help Transcripts from the Matched Annotation from the NCBI and EMBL-EBI (MANE) collaboration.
NP_006756.2:p.Val266= synonymous NM_001356429.2:c.798G>A NP_001343358.1:p.Val266= synonymous NM_001413583.1:c.798G>A NP_001400512.1:p.Val266= synonymous NM_001413669.1:c.630G>A NP_001400598.1:p.Val210= synonymous NM_001413670.1:c.738G>A NP_001400599.1:p.Val246= synonymous NM_001413671.1:c.630G>A NP_001400600.1:p.Val210= synonymous NM_001413672.1:c.630G>A NP_001400601.1:p.Val210= synonymous NM_001413673.1:c.798G>A NP_001400602.1:p.Val266= synonymous NM_001413674.1:c.798G>A NP_001400603.1:p.Val266= synonymous NM_001413675.1:c.798G>A NP_001400604.1:p.Val266= synonymous NM_001413676.1:c.798G>A NP_001400605.1:p.Val266= synonymous NM_001413677.1:c.366G>A NP_001400606.1:p.Val122= synonymous NM_001413678.1:c.411G>A NP_001400607.1:p.Val137= synonymous NM_001413679.1:c.798G>A NP_001400608.1:p.Val266= synonymous NM_001413680.1:c.798G>A NP_001400609.1:p.Val266= synonymous NM_001413681.1:c.798G>A NP_001400610.1:p.Val266= synonymous NM_001413682.1:c.798G>A NP_001400611.1:p.Val266= synonymous NM_001413683.1:c.798G>A NP_001400612.1:p.Val266= synonymous NM_001413684.1:c.798G>A NP_001400613.1:p.Val266= synonymous NM_001413685.1:c.798G>A NP_001400614.1:p.Val266= synonymous NM_001413686.1:c.798G>A NP_001400615.1:p.Val266= synonymous NM_001413687.1:c.798G>A NP_001400616.1:p.Val266= synonymous NM_001413688.1:c.798G>A NP_001400617.1:p.Val266= synonymous NM_001413689.1:c.798G>A NP_001400618.1:p.Val266= synonymous NM_001413690.1:c.792G>A NP_001400619.1:p.Val264= synonymous NM_001413691.1:c.798G>A NP_001400620.1:p.Val266= synonymous NM_178234.2:c.798G>A NP_839952.1:p.Val266= synonymous NR_182195.1:n.966G>A non-coding transcript variant NR_182196.1:n.966G>A non-coding transcript variant NR_182197.1:n.966G>A non-coding transcript variant NR_182198.1:n.966G>A non-coding transcript variant NR_182199.1:n.966G>A non-coding transcript variant NC_000008.11:g.15673836G>A NC_000008.10:g.15531345G>A NG_012141.2:g.138616G>A - Protein change
- Other names
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- Canonical SPDI
- NC_000008.11:15673835:G:A
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Functional
consequence HelpThe effect of the variant on RNA or protein function, based on experimental evidence from submitters.
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Global minor allele
frequency (GMAF) HelpThe global minor allele frequency calculated by the 1000 Genomes Project. The minor allele at this location is indicated in parentheses and may be different from the allele represented by this VCV record.
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Allele frequency
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The frequency of the allele represented by this VCV record.
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- Links
Genes
Gene | OMIM | ClinGen Gene Dosage Sensitivity Curation |
Variation Viewer
Help
Links to Variation Viewer, a genome browser to view variation data from NCBI databases. |
Related variants | ||
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HI score
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The haploinsufficiency score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
TS score
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The triplosensitivity score for the gene, curated by ClinGen’s Dosage Sensitivity Curation task team. |
Within gene
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The number of variants in ClinVar that are contained within this gene, with a link to view the list of variants. |
All
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The number of variants in ClinVar for this gene, including smaller variants within the gene and larger CNVs that overlap or fully contain the gene. |
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TUSC3 | - | - |
GRCh38 GRCh37 |
274 | 366 |
Conditions - Germline
Condition
Help
The condition for this variant-condition (RCV) record in ClinVar. |
Classification
Help
The aggregate germline classification for this variant-condition (RCV) record in ClinVar. The number of submissions that contribute to this aggregate classification is shown in parentheses. (# of submissions) |
Review status
Help
The aggregate review status for this variant-condition (RCV) record in ClinVar. This value is calculated by NCBI based on data from submitters. Read our rules for calculating the review status. |
Last evaluated
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The most recent date that a submitter evaluated this variant for the condition. |
Variation/condition record
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The RCV accession number, with most recent version number, for the variant-condition record, with a link to the RCV web page. |
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Uncertain significance (1) |
criteria provided, single submitter
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Apr 10, 2018 | RCV002412400.2 |
Submissions - Germline
Classification
Help
The submitted germline classification for each SCV record. (Last evaluated) |
Review status
Help
Stars represent the review status, or the level of review supporting the submitted (SCV) record. This value is calculated by NCBI based on data from the submitter. Read our rules for calculating the review status. This column also includes a link to the submitter’s assertion criteria if provided, and the collection method. (Assertion criteria) |
Condition
Help
The condition for the classification, provided by the submitter for this submitted (SCV) record. This column also includes the affected status and allele origin of individuals observed with this variant. |
Submitter
Help
The submitting organization for this submitted (SCV) record. This column also includes the SCV accession and version number, the date this SCV first appeared in ClinVar, and the date that this SCV was last updated in ClinVar. |
More information
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This column includes more information supporting the classification, including citations, the comment on classification, and detailed evidence provided as observations of the variant by the submitter. |
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Uncertain significance
(Apr 10, 2018)
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criteria provided, single submitter
Method: clinical testing
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Inborn genetic diseases
Affected status: unknown
Allele origin:
germline
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Ambry Genetics
Accession: SCV002675698.2
First in ClinVar: Nov 29, 2022 Last updated: May 01, 2024 |
Comment:
The c.798G>A variant (also known as p.V266V), located in coding exon 6 of the TUSC3 gene, results from a G to A substitution at nucleotide … (more)
The c.798G>A variant (also known as p.V266V), located in coding exon 6 of the TUSC3 gene, results from a G to A substitution at nucleotide position 798. This nucleotide substitution does not change the at codon 266. However, this change occurs in the last base pair of coding exon 6, which makes it likely to have some effect on normal mRNA splicing. This nucleotide position is highly conserved in available vertebrate species. Using two different splice site prediction tools, this alteration is predicted by ESEfinder to weaken the efficiency of the native splice donor site, but is not predicted to have a deleterious effect on this splice donor site by BDGP; however, direct evidence is unavailable. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. (less)
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Germline Functional Evidence
There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar. |
Citations for germline classification of this variant
HelpThere are no citations for germline classification of this variant in ClinVar. If you know of citations for this variation, please consider submitting that information to ClinVar. |
Text-mined citations for this variant ...
HelpRecord last updated May 01, 2024
This date represents the last time this VCV record was updated. The update may be due to an update to one of the included submitted records (SCVs), or due to an update that ClinVar made to the variant such as adding HGVS expressions or a rs number. So this date may be different from the date of the “most recent submission” reported at the top of this page.