NM_001141947.3(CCDC66):c.2024A>G (p.Asn675Ser) AND not specified

Germline classification:: Likely benign (1 submission)
Last evaluated:: May 15, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004604576.1

Allele description [Variation Report for NM_001141947.3(CCDC66):c.2024A>G (p.Asn675Ser)]

NM_001141947.3(CCDC66):c.2024A>G (p.Asn675Ser)

Gene:

CCDC66:coiled-coil domain containing 66 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p14.3

Genomic location:

Preferred name:

NM_001141947.3(CCDC66):c.2024A>G (p.Asn675Ser)

HGVS:

NC_000003.12:g.56617292A>G
NM_001012506.5:c.1922A>G
NM_001141947.3:c.2024A>GMANE SELECT
NM_001353147.1:c.2042A>G
NM_001353148.1:c.2006A>G
NM_001353149.1:c.2003A>G
NM_001353150.1:c.1955A>G
NM_001353151.1:c.1925A>G
NM_001353152.1:c.1922A>G
NM_001353153.1:c.1922A>G
NM_001353154.1:c.1895A>G
NM_001353155.1:c.1874A>G
NM_001353156.1:c.1127A>G
NM_001353158.1:c.998A>G
NM_001353160.1:c.932A>G
NP_001012524.4:p.Asn641Ser
NP_001135419.1:p.Asn675Ser
NP_001340076.1:p.Asn681Ser
NP_001340077.1:p.Asn669Ser
NP_001340078.1:p.Asn668Ser
NP_001340079.1:p.Asn652Ser
NP_001340080.1:p.Asn642Ser
NP_001340081.1:p.Asn641Ser
NP_001340082.1:p.Asn641Ser
NP_001340083.1:p.Asn632Ser
NP_001340084.1:p.Asn625Ser
NP_001340085.1:p.Asn376Ser
NP_001340087.1:p.Asn333Ser
NP_001340089.1:p.Asn311Ser
NC_000003.11:g.56651320A>G
NM_001141947.1:c.2024A>G
NR_024460.2:n.2092A>G
NR_148366.1:n.2222A>G
NR_148367.1:n.2226A>G
NR_148368.1:n.2143A>G
NR_148369.1:n.2094A>G
NR_148370.1:n.2096A>G
NR_148371.1:n.2305A>G
NR_148372.1:n.2278A>G
NR_148373.1:n.2293A>G
NR_148374.1:n.2295A>G
NR_148375.1:n.2162A>G
NR_148376.1:n.2175A>G
NR_148377.1:n.2124A>G
NR_148378.1:n.1993A>G

Protein change:

N311S

Molecular consequence:

NM_001012506.5:c.1922A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001141947.3:c.2024A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353147.1:c.2042A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353148.1:c.2006A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353149.1:c.2003A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353150.1:c.1955A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353151.1:c.1925A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353152.1:c.1922A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353153.1:c.1922A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353154.1:c.1895A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353155.1:c.1874A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353156.1:c.1127A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353158.1:c.998A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353160.1:c.932A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_024460.2:n.2092A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148366.1:n.2222A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148367.1:n.2226A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148368.1:n.2143A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148369.1:n.2094A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148370.1:n.2096A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148371.1:n.2305A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148372.1:n.2278A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148373.1:n.2293A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148374.1:n.2295A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148375.1:n.2162A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148376.1:n.2175A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148377.1:n.2124A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148378.1:n.1993A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Homo sapiens cytohesin 2 (CYTH2), transcript variant 1, mRNA
Homo sapiens cytohesin 2 (CYTH2), transcript variant 1, mRNA
gi|1914825641|ref|NM_017457.6|

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005097309	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Likely benign (May 15, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005097309

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Likely benign
(May 15, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005097309.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 11, 2024

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