NM_000388.4(CASR):c.1188A>G (p.Thr396=) AND CASR-related disorder

Germline classification:: Likely benign (1 submission)
Last evaluated:: Sep 19, 2019
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004554754.2

Allele description [Variation Report for NM_000388.4(CASR):c.1188A>G (p.Thr396=)]

NM_000388.4(CASR):c.1188A>G (p.Thr396=)

Gene:

CASR:calcium sensing receptor [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3q21.1

Genomic location:

Preferred name:

NM_000388.4(CASR):c.1188A>G (p.Thr396=)

HGVS:

NC_000003.12:g.122262223A>G
NG_009058.1:g.83541A>G
NM_000388.4:c.1188A>GMANE SELECT
NM_001178065.2:c.1188A>G
NP_000379.3:p.Thr396=
NP_001171536.2:p.Thr396=
NC_000003.11:g.121981070A>G
NM_000388.3:c.1188A>G
NM_001178065.1:c.1188A>G

Links:

dbSNP: rs200312817

NCBI 1000 Genomes Browser:

rs200312817

Molecular consequence:

NM_000388.4:c.1188A>G - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001178065.2:c.1188A>G - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: CASR-related disorder
Synonyms:: CASR-related condition
Identifiers:

Recent activity

Clear Turn Off Turn On

KIRREL1 kirre like nephrin family adhesion molecule 1 [Homo sapiens]
KIRREL1 kirre like nephrin family adhesion molecule 1 [Homo sapiens]
Gene ID:55243

Gene
Gene Links for GEO Profiles (Select 67609957) (1)
Gene
LINC01148 long intergenic non-protein coding RNA 1148 [Homo sapiens]
LINC01148 long intergenic non-protein coding RNA 1148 [Homo sapiens]
Gene ID:283585

Gene
Gene Links for GEO Profiles (Select 67627053) (1)
Gene

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004741068	PreventionGenetics, part of Exact Sciences	no assertion criteria provided	Likely benign (Sep 19, 2019)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004741068

PreventionGenetics, part of Exact Sciences

no assertion criteria provided

Likely benign
(Sep 19, 2019)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004741068.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

ClinVar

Relating variation to medicine