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NM_001080517.3(SETD5):c.3721-1G>A AND SETD5-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Sep 19, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004547979.2

Allele description [Variation Report for NM_001080517.3(SETD5):c.3721-1G>A]

NM_001080517.3(SETD5):c.3721-1G>A

Gene:
SETD5:SET domain containing 5 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_001080517.3(SETD5):c.3721-1G>A
HGVS:
  • NC_000003.12:g.9475482G>A
  • NG_034132.1:g.82783G>A
  • NM_001080517.2:c.3721-1G>A
  • NM_001080517.3:c.3721-1G>AMANE SELECT
  • NM_001292043.2:c.3427-1G>A
  • NM_001349451.2:c.3427-1G>A
  • NC_000003.11:g.9517166G>A
Links:
dbSNP: rs1226313778
NCBI 1000 Genomes Browser:
rs1226313778
Molecular consequence:
  • NM_001080517.3:c.3721-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001292043.2:c.3427-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]
  • NM_001349451.2:c.3427-1G>A - splice acceptor variant - [Sequence Ontology: SO:0001574]

Condition(s)

Name:
SETD5-related disorder
Synonyms:
SETD5-related disorders; SETD5-related condition
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004118752PreventionGenetics, part of Exact Sciences
no assertion criteria provided
Uncertain significance
(Sep 19, 2024) 		germlineclinical testing

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004118752.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The SETD5 c.3721-1G>A variant is predicted to disrupt the AG splice acceptor site and interfere with normal splicing. To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.0065% of alleles in individuals of African descent in gnomAD. At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024