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NM_002691.4(POLD1):c.961G>A (p.Gly321Ser) AND POLD1-related disorder

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 30, 2024
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004530247.2

Allele description [Variation Report for NM_002691.4(POLD1):c.961G>A (p.Gly321Ser)]

NM_002691.4(POLD1):c.961G>A (p.Gly321Ser)

Gene:
POLD1:DNA polymerase delta 1, catalytic subunit [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.33
Genomic location:
Preferred name:
NM_002691.4(POLD1):c.961G>A (p.Gly321Ser)
HGVS:
  • NC_000019.10:g.50402732G>A
  • NG_033800.1:g.23410G>A
  • NM_001256849.1:c.961G>A
  • NM_001308632.1:c.961G>A
  • NM_002691.4:c.961G>AMANE SELECT
  • NP_001243778.1:p.Gly321Ser
  • NP_001295561.1:p.Gly321Ser
  • NP_002682.2:p.Gly321Ser
  • LRG_785t1:c.961G>A
  • LRG_785t2:c.961G>A
  • LRG_785:g.23410G>A
  • LRG_785p1:p.Gly321Ser
  • LRG_785p2:p.Gly321Ser
  • NC_000019.9:g.50905989G>A
  • NM_002691.2:c.961G>A
  • NM_002691.3:c.961G>A
  • NM_002691.4:c.961G>A
  • NR_046402.2:n.1006G>A
Protein change:
G321S
Links:
dbSNP: rs41554817
NCBI 1000 Genomes Browser:
rs41554817
Molecular consequence:
  • NM_001256849.1:c.961G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001308632.1:c.961G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002691.4:c.961G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NR_046402.2:n.1006G>A - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
POLD1-related disorder
Synonyms:
POLD1-related disorders; POLD1-related condition
Identifiers:

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004739002PreventionGenetics, part of Exact Sciences
no assertion criteria provided
Uncertain significance
(Jul 30, 2024)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004739002.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The POLD1 c.961G>A variant is predicted to result in the amino acid substitution p.Gly321Ser. This variant has been reported in an individual with adenomatous polyps and a family history of colorectal cancer or adenomatous polyposis (Weren et al. 2015. PubMed ID: 25938944) and an individual suspected of having Lynch syndrome (Jansen et al. 2016. PubMed ID: 26648449). It was also reported as a variant of uncertain significance in a study of individuals with early-onset colorectal cancer or familial colorectal cancer (Djursby et al. 2020. PubMed ID: 33193653) and in a study of patients with a suspected hereditary tumor syndrome (Henn et al. 2019. PubMed ID: 30680046). Two additional unrelated patients with multiple colorectal polyps and colorectal cancer were also reported to have this variant; however, the variant did not co-segregate with disease in one family and co-segregation analysis was unavailable for the other family (Table 2 and Figure 1A, Elsayed et al. 2019. PubMed ID: 30827058). This variant is reported in 0.066% of alleles in individuals of European (Non-Finnish) descent in gnomAD and has been interpreted as a variant of uncertain significance and likely benign in ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/variation/221136/). Although we suspect that this variant may be benign, at this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 10, 2024