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NM_007327.4(GRIN1):c.2443G>A (p.Gly815Arg) AND GRIN1-related disorder

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 28, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004528975.1

Allele description [Variation Report for NM_007327.4(GRIN1):c.2443G>A (p.Gly815Arg)]

NM_007327.4(GRIN1):c.2443G>A (p.Gly815Arg)

Gene:
GRIN1:glutamate ionotropic receptor NMDA type subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
9q34.3
Genomic location:
Preferred name:
NM_007327.4(GRIN1):c.2443G>A (p.Gly815Arg)
HGVS:
  • NC_000009.12:g.137163668G>A
  • NG_011507.1:g.29512G>A
  • NM_000832.7:c.2443G>A
  • NM_001185090.2:c.2506G>A
  • NM_001185091.2:c.2506G>A
  • NM_007327.4:c.2443G>AMANE SELECT
  • NM_021569.4:c.2443G>A
  • NP_000823.4:p.Gly815Arg
  • NP_001172019.1:p.Gly836Arg
  • NP_001172020.1:p.Gly836Arg
  • NP_015566.1:p.Gly815Arg
  • NP_067544.1:p.Gly815Arg
  • NC_000009.11:g.140058120G>A
  • NM_007327.3:c.2443G>A
Protein change:
G815R
Links:
dbSNP: rs797044925
NCBI 1000 Genomes Browser:
rs797044925
Molecular consequence:
  • NM_000832.7:c.2443G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001185090.2:c.2506G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001185091.2:c.2506G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_007327.4:c.2443G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_021569.4:c.2443G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
GRIN1-related disorder
Synonyms:
GRIN1-related condition
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004104862PreventionGenetics, part of Exact Sciences
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Aug 28, 2023) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From PreventionGenetics, part of Exact Sciences, SCV004104862.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The GRIN1 c.2443G>A variant is predicted to result in the amino acid substitution p.Gly815Arg. This variant was reported in multiple individuals with epilepsy; in at least four cases this variant was established as de novo (Helbig et al. 2016. PubMed ID: 26795593, supplementary data; Farwell et al. 2014. PubMed ID: 25356970, supplementary data; Naess et al. 2020. PubMed ID: 32827528; Stranneheim et al. 2021. PubMed ID: 33726816, Table S7). This variant has not been reported in a large population database (http://gnomad.broadinstitute.org), indicating this variant is rare. This variant is interpreted as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 26, 2024