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NM_000492.4(CFTR):c.1736A>C (p.Asp579Ala) AND not specified

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 27, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004527018.2

Allele description [Variation Report for NM_000492.4(CFTR):c.1736A>C (p.Asp579Ala)]

NM_000492.4(CFTR):c.1736A>C (p.Asp579Ala)

Gene:
CFTR:CF transmembrane conductance regulator [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7q31.2
Genomic location:
Preferred name:
NM_000492.4(CFTR):c.1736A>C (p.Asp579Ala)
HGVS:
  • NC_000007.14:g.117590409A>C
  • NG_016465.4:g.129626A>C
  • NM_000492.4:c.1736A>CMANE SELECT
  • NP_000483.3:p.Asp579Ala
  • NP_000483.3:p.Asp579Ala
  • LRG_663t1:c.1736A>C
  • LRG_663:g.129626A>C
  • LRG_663p1:p.Asp579Ala
  • NC_000007.13:g.117230463A>C
  • NM_000492.3:c.1736A>C
Protein change:
D579A
Links:
dbSNP: rs397508288
NCBI 1000 Genomes Browser:
rs397508288
Molecular consequence:
  • NM_000492.4:c.1736A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV005040630Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Uncertain significance
(Mar 27, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV005040630.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Variant summary: CFTR c.1736A>C (p.Asp579Ala) results in a non-conservative amino acid change located in the ABC transporter-like, ATP-binding domain (IPR003439) of the encoded protein sequence. Four of four in-silico tools predict a damaging effect of the variant on protein function. The variant was absent in 250214 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. To our knowledge, no occurrence of c.1736A>C in individuals affected with Cystic Fibrosis and no experimental evidence demonstrating its impact on protein function have been reported in the literature, although the CFTR Locus-specific database reports a patient who had the variant in trans with a pathogenic variant. Another missense change affecting this amino acid has been determined to be pathogenic, suggesting this is a functionally important residue. No submitters have cited clinical-significance assessments for this variant to ClinVar. Based on the evidence outlined above, the variant was classified as VUS-possibly pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jul 7, 2024