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NM_000388.4(CASR):c.1547A>G (p.Lys516Arg) AND Nephrolithiasis/nephrocalcinosis

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
May 12, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004525577.1

Allele description [Variation Report for NM_000388.4(CASR):c.1547A>G (p.Lys516Arg)]

NM_000388.4(CASR):c.1547A>G (p.Lys516Arg)

Gene:
CASR:calcium sensing receptor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q21.1
Genomic location:
Preferred name:
NM_000388.4(CASR):c.1547A>G (p.Lys516Arg)
HGVS:
  • NC_000003.12:g.122275981A>G
  • NG_009058.2:g.97314A>G
  • NM_000388.4:c.1547A>GMANE SELECT
  • NM_001178065.2:c.1547A>G
  • NP_000379.3:p.Lys516Arg
  • NP_001171536.2:p.Lys516Arg
  • NC_000003.11:g.121994828A>G
  • NM_000388.3:c.1547A>G
Protein change:
K516R
Molecular consequence:
  • NM_000388.4:c.1547A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001178065.2:c.1547A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Nephrolithiasis/nephrocalcinosis
Identifiers:
MedGen: CN580796

Recent activity

Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005035356Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(May 12, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005035356.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.K516R variant (also known as c.1547A>G), located in coding exon 4 of the CASR gene, results from an A to G substitution at nucleotide position 1547. The lysine at codon 516 is replaced by arginine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024