NM_004656.4(BAP1):c.1823A>G (p.Asp608Gly) AND Hereditary cancer-predisposing syndrome

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 31, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004519169.1

Allele description [Variation Report for NM_004656.4(BAP1):c.1823A>G (p.Asp608Gly)]

NM_004656.4(BAP1):c.1823A>G (p.Asp608Gly)

Gene:

BAP1:BRCA1 associated protein 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p21.1

Genomic location:

Preferred name:

NM_004656.4(BAP1):c.1823A>G (p.Asp608Gly)

HGVS:

NC_000003.12:g.52403205T>C
NG_031859.1:g.11789A>G
NM_001410772.1:c.1769A>G
NM_004656.4:c.1823A>GMANE SELECT
NP_001397701.1:p.Asp590Gly
NP_004647.1:p.Asp608Gly
NP_004647.1:p.Asp608Gly
LRG_529t1:c.1823A>G
LRG_529:g.11789A>G
LRG_529p1:p.Asp608Gly
NC_000003.11:g.52437221T>C
NM_004656.2:c.1823A>G

Protein change:

D590G

Molecular consequence:

NM_001410772.1:c.1769A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_004656.4:c.1823A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Hereditary cancer-predisposing syndrome
Synonyms:: Neoplastic Syndromes, Hereditary; Tumor predisposition; Cancer predisposition; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0015356; MeSH: D009386; MedGen: C0027672

Recent activity

Clear Turn Off Turn On

COL1A2 [Oryctolagus cuniculus]
COL1A2 [Oryctolagus cuniculus]
Gene ID:100008997

Gene

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV005023329	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Dec 31, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV005023329

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Dec 31, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV005023329.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The p.D608G variant (also known as c.1823A>G), located in coding exon 14 of the BAP1 gene, results from an A to G substitution at nucleotide position 1823. The aspartic acid at codon 608 is replaced by glycine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

ClinVar

Relating variation to medicine