U.S. flag

An official website of the United States government

NM_001184.4(ATR):c.2561A>G (p.Tyr854Cys) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jan 27, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004507943.1

Allele description [Variation Report for NM_001184.4(ATR):c.2561A>G (p.Tyr854Cys)]

NM_001184.4(ATR):c.2561A>G (p.Tyr854Cys)

Gene:
ATR:ATR serine/threonine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3q23
Genomic location:
Preferred name:
NM_001184.4(ATR):c.2561A>G (p.Tyr854Cys)
HGVS:
  • NC_000003.12:g.142553712T>C
  • NG_008951.1:g.30115A>G
  • NM_001184.4:c.2561A>GMANE SELECT
  • NM_001354579.2:c.2369A>G
  • NP_001175.2:p.Tyr854Cys
  • NP_001341508.1:p.Tyr790Cys
  • LRG_1403t1:c.2561A>G
  • LRG_1403:g.30115A>G
  • LRG_1403p1:p.Tyr854Cys
  • NC_000003.11:g.142272554T>C
  • NM_001184.3:c.2561A>G
Protein change:
Y790C
Molecular consequence:
  • NM_001184.4:c.2561A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354579.2:c.2369A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005016889Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Jan 27, 2024) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005016889.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.Y854C variant (also known as c.2561A>G), located in coding exon 12 of the ATR gene, results from an A to G substitution at nucleotide position 2561. The tyrosine at codon 854 is replaced by cysteine, an amino acid with highly dissimilar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Based on the available evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024