NM_032330.3(CAPNS2):c.53C>T (p.Ala18Val) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Dec 12, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004427044.1

Allele description [Variation Report for NM_032330.3(CAPNS2):c.53C>T (p.Ala18Val)]

NM_032330.3(CAPNS2):c.53C>T (p.Ala18Val)

Genes:

CAPNS2:calpain small subunit 2 [Gene - OMIM - HGNC]
LPCAT2:lysophosphatidylcholine acyltransferase 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16q12.2

Genomic location:

Preferred name:

NM_032330.3(CAPNS2):c.53C>T (p.Ala18Val)

HGVS:

NC_000016.10:g.55566809C>T
NM_017839.5:c.1216-7822C>TMANE SELECT
NM_032330.3:c.53C>TMANE SELECT
NP_115706.1:p.Ala18Val
NC_000016.9:g.55600721C>T
NM_032330.1:c.53C>T

Protein change:

A18V

Molecular consequence:

NM_017839.5:c.1216-7822C>T - intron variant - [Sequence Ontology: SO:0001627]
NM_032330.3:c.53C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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Homo sapiens general transcription factor IIH, polypeptide 4, 52kDa (GTF2H4), mR...
Homo sapiens general transcription factor IIH, polypeptide 4, 52kDa (GTF2H4), mRNA
gi|34222289|ref|NM_001517.3|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004918200	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Dec 12, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004918200

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Dec 12, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004918200.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.53C>T (p.A18V) alteration is located in exon 1 (coding exon 1) of the CAPNS2 gene. This alteration results from a C to T substitution at nucleotide position 53, causing the alanine (A) at amino acid position 18 to be replaced by a valine (V). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 1, 2024

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