NM_005121.3(MED13):c.6196G>T (p.Gly2066Cys) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Oct 25, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004421778.1

Allele description [Variation Report for NM_005121.3(MED13):c.6196G>T (p.Gly2066Cys)]

NM_005121.3(MED13):c.6196G>T (p.Gly2066Cys)

Gene:

MED13:mediator complex subunit 13 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q23.2

Genomic location:

Preferred name:

NM_005121.3(MED13):c.6196G>T (p.Gly2066Cys)

HGVS:

NC_000017.11:g.61950920C>A
NG_046948.1:g.119392G>T
NM_005121.3:c.6196G>TMANE SELECT
NP_005112.2:p.Gly2066Cys
NC_000017.10:g.60028281C>A
NM_005121.2:c.6196G>T

Protein change:

G2066C

Molecular consequence:

NM_005121.3:c.6196G>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

Recent activity

Clear Turn Off Turn On

Mus musculus SET domain containing 1A, mRNA (cDNA clone IMAGE:5387990), complete...
Mus musculus SET domain containing 1A, mRNA (cDNA clone IMAGE:5387990), complete cds
gi|29437231|gb|BC049883.1|

Nucleotide
SRP315589 (5)
SRA
PREDICTED: Oreochromis aureus prolyl 3-hydroxylase 2 (p3h2), mRNA
PREDICTED: Oreochromis aureus prolyl 3-hydroxylase 2 (p3h2), mRNA
gi|1988819793|ref|XM_031745400.2|

Nucleotide
MAG: dihydroorotase [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_14]
MAG: dihydroorotase [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_14]
gi|1085147715|gb|OGT38793.1||gnl|WG V|A3F11_08175

Protein
Hepatitis C virus isolate 480-0533-5 core protein gene, partial cds
Hepatitis C virus isolate 480-0533-5 core protein gene, partial cds
gi|359302071|gb|JN214887.1|

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004905320	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Oct 25, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004905320

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Oct 25, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004905320.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.6196G>T (p.G2066C) alteration is located in exon 28 (coding exon 28) of the MED13 gene. This alteration results from a G to T substitution at nucleotide position 6196, causing the glycine (G) at amino acid position 2066 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

ClinVar

Relating variation to medicine