NM_020937.4(FANCM):c.1550C>A (p.Thr517Lys) AND Inborn genetic diseases

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 12, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004383747.1

Allele description [Variation Report for NM_020937.4(FANCM):c.1550C>A (p.Thr517Lys)]

NM_020937.4(FANCM):c.1550C>A (p.Thr517Lys)

Gene:

FANCM:FA complementation group M [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

14q21.2

Genomic location:

Preferred name:

NM_020937.4(FANCM):c.1550C>A (p.Thr517Lys)

HGVS:

NC_000014.9:g.45159249C>A
NG_007417.1:g.28317C>A
NM_001308133.2:c.1472C>A
NM_001308134.2:c.1550C>A
NM_020937.4:c.1550C>AMANE SELECT
NP_001295062.1:p.Thr491Lys
NP_001295063.1:p.Thr517Lys
NP_065988.1:p.Thr517Lys
NP_065988.1:p.Thr517Lys
LRG_502t1:c.1550C>A
LRG_502:g.28317C>A
LRG_502p1:p.Thr517Lys
NC_000014.8:g.45628452C>A
NM_020937.2:c.1550C>A

Protein change:

T491K

Molecular consequence:

NM_001308133.2:c.1472C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001308134.2:c.1550C>A - missense variant - [Sequence Ontology: SO:0001583]
NM_020937.4:c.1550C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Inborn genetic diseases
Identifiers:: MeSH: D030342; MedGen: C0950123

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AGA [Equus przewalskii]
AGA [Equus przewalskii]
Gene ID:103544136

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004869896	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Feb 12, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004869896

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Feb 12, 2024)

germline

clinical testing

Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004869896.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1550C>A (p.T517K) alteration is located in exon 9 (coding exon 9) of the FANCM gene. This alteration results from a C to A substitution at nucleotide position 1550, causing the threonine (T) at amino acid position 517 to be replaced by a lysine (K). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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