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NM_001384359.1(FUT1):c.425G>A (p.Arg142Gln) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Jun 29, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004353198.1

Allele description [Variation Report for NM_001384359.1(FUT1):c.425G>A (p.Arg142Gln)]

NM_001384359.1(FUT1):c.425G>A (p.Arg142Gln)

Gene:
FUT1:fucosyltransferase 1 (H blood group) [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.33
Genomic location:
Preferred name:
NM_001384359.1(FUT1):c.425G>A (p.Arg142Gln)
HGVS:
  • NC_000019.10:g.48750857C>T
  • NG_007510.2:g.9534G>A
  • NM_000148.4:c.425G>A
  • NM_001329877.1:c.425G>A
  • NM_001384359.1:c.425G>AMANE SELECT
  • NP_000139.1:p.Arg142Gln
  • NP_001316806.1:p.Arg142Gln
  • NP_001371288.1:p.Arg142Gln
  • LRG_810t1:c.425G>A
  • LRG_810t2:c.425G>A
  • LRG_810t3:c.425G>A
  • LRG_810:g.9534G>A
  • LRG_810p1:p.Arg142Gln
  • LRG_810p2:p.Arg142Gln
  • LRG_810p3:p.Arg142Gln
  • NC_000019.9:g.49254114C>T
  • NM_000148.3:c.425G>A
Protein change:
R142Q
Molecular consequence:
  • NM_000148.4:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001329877.1:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001384359.1:c.425G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV004077992Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Likely benign
(Jun 29, 2023) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV004077992.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024