NM_052818.3(N4BP2L1):c.59A>G (p.Gln20Arg) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 13, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004184407.1

Allele description [Variation Report for NM_052818.3(N4BP2L1):c.59A>G (p.Gln20Arg)]

NM_052818.3(N4BP2L1):c.59A>G (p.Gln20Arg)

Genes:

LOC130009528:ATAC-STARR-seq lymphoblastoid silent region 5248 [Gene]
N4BP2L1:NEDD4 binding protein 2 like 1 [Gene - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q13.1

Genomic location:

Preferred name:

NM_052818.3(N4BP2L1):c.59A>G (p.Gln20Arg)

HGVS:

NC_000013.11:g.32428024T>C
NM_001079691.2:c.59A>G
NM_001286459.2:c.59A>G
NM_001286460.2:c.59A>G
NM_001286461.2:c.59A>G
NM_001353627.2:c.59A>G
NM_001353628.2:c.59A>G
NM_001353629.2:c.-382A>G
NM_001353630.2:c.59A>G
NM_001353631.2:c.-382A>G
NM_001353632.2:c.59A>G
NM_001353633.2:c.-181A>G
NM_001353634.2:c.59A>G
NM_001353635.2:c.59A>G
NM_001353636.2:c.59A>G
NM_001353637.2:c.59A>G
NM_052818.3:c.59A>GMANE SELECT
NP_001073159.1:p.Gln20Arg
NP_001273388.1:p.Gln20Arg
NP_001273389.1:p.Gln20Arg
NP_001273390.1:p.Gln20Arg
NP_001340556.1:p.Gln20Arg
NP_001340557.1:p.Gln20Arg
NP_001340559.1:p.Gln20Arg
NP_001340561.1:p.Gln20Arg
NP_001340563.1:p.Gln20Arg
NP_001340564.1:p.Gln20Arg
NP_001340565.1:p.Gln20Arg
NP_001340566.1:p.Gln20Arg
NP_438169.2:p.Gln20Arg
NC_000013.10:g.33002161T>C
NM_052818.2:c.59A>G
NR_148475.2:n.107A>G
NR_148476.2:n.107A>G
NR_148477.2:n.107A>G
NR_148478.2:n.107A>G
NR_148479.2:n.107A>G
NR_148480.2:n.107A>G

Protein change:

Q20R

Molecular consequence:

NM_001353629.2:c.-382A>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353631.2:c.-382A>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001353633.2:c.-181A>G - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001079691.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001286459.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001286460.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001286461.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353627.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353628.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353630.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353632.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353634.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353635.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353636.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001353637.2:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NM_052818.3:c.59A>G - missense variant - [Sequence Ontology: SO:0001583]
NR_148475.2:n.107A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148476.2:n.107A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148477.2:n.107A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148478.2:n.107A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148479.2:n.107A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]
NR_148480.2:n.107A>G - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003681729	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Aug 13, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003681729

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Aug 13, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003681729.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.59A>G (p.Q20R) alteration is located in exon 1 (coding exon 1) of the N4BP2L1 gene. This alteration results from a A to G substitution at nucleotide position 59, causing the glutamine (Q) at amino acid position 20 to be replaced by an arginine (R). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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