NM_022104.4(PCIF1):c.1882A>C (p.Lys628Gln) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Nov 17, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004167677.1

Allele description [Variation Report for NM_022104.4(PCIF1):c.1882A>C (p.Lys628Gln)]

NM_022104.4(PCIF1):c.1882A>C (p.Lys628Gln)

Gene:

PCIF1:phosphorylated CTD interacting factor 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

20q13.12

Genomic location:

Preferred name:

NM_022104.4(PCIF1):c.1882A>C (p.Lys628Gln)

HGVS:

NC_000020.11:g.45947437A>C
NG_029772.1:g.29758T>G
NM_022104.4:c.1882A>CMANE SELECT
NP_071387.1:p.Lys628Gln
NC_000020.10:g.44576076A>C
NM_022104.3:c.1882A>C

Protein change:

K628Q

Molecular consequence:

NM_022104.4:c.1882A>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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Enterobacter roggenkampii strain 1202528 L_51_consensus, whole genome shotgun se...
Enterobacter roggenkampii strain 1202528 L_51_consensus, whole genome shotgun sequence
gi|2690414816|ref|NZ_JAQNEO01000005 gnl|WGS:NZ_JAQNEO01|L_51_consensus

Nucleotide
TRG1, fungal biomass, glucose, rep1
TRG1, fungal biomass, glucose, rep1

biosample
acetylcholine receptor subunit alpha isoform X1 [Oncorhynchus mykiss]
acetylcholine receptor subunit alpha isoform X1 [Oncorhynchus mykiss]
gi|1211340937|ref|XP_021452871.1|

Protein
origin of replication complex subunit 2 [Oryza sativa Japonica Group]
origin of replication complex subunit 2 [Oryza sativa Japonica Group]
gi|2203628337|ref|NP_001388990.1|

Protein
T Messier (2009)
PMC

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003665507	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Nov 17, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003665507

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Nov 17, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003665507.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1882A>C (p.K628Q) alteration is located in exon 16 (coding exon 14) of the PCIF1 gene. This alteration results from a A to C substitution at nucleotide position 1882, causing the lysine (K) at amino acid position 628 to be replaced by a glutamine (Q). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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