NM_001010898.4(SLC6A17):c.1976G>A (p.Arg659His) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Sep 16, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004081823.1

Allele description [Variation Report for NM_001010898.4(SLC6A17):c.1976G>A (p.Arg659His)]

NM_001010898.4(SLC6A17):c.1976G>A (p.Arg659His)

Gene:

SLC6A17:solute carrier family 6 member 17 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p13.3

Genomic location:

Preferred name:

NM_001010898.4(SLC6A17):c.1976G>A (p.Arg659His)

HGVS:

NC_000001.11:g.110198236G>A
NG_051945.1:g.52723G>A
NM_001010898.4:c.1976G>AMANE SELECT
NP_001010898.1:p.Arg659His
NC_000001.10:g.110740858G>A
NM_001010898.2:c.1976G>A

Protein change:

R659H

Molecular consequence:

NM_001010898.4:c.1976G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

Recent activity

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gi|296147842|ref|NM_001183418.1|

Nucleotide
glycerol kinase [Mycoplasma pneumoniae M129]
glycerol kinase [Mycoplasma pneumoniae M129]
gi|13507789|ref|NP_109738.1|

Protein
Lepisosteus oculatus
Lepisosteus oculatus

Genome
Genome Links for Protein (Select 973213589) (1)
Genome
MAG: Gordonibacter urolithinfaciens isolate ChiBcec19-146 c_000000000115_SRA:SRR...
MAG: Gordonibacter urolithinfaciens isolate ChiBcec19-146 c_000000000115_SRA:SRR6323126, whole genome shotgun sequence
gi|2486041067|ref|NZ_DYWS01000115.1 |WGS:NZ_DYWS01|c_000000000115_SRA:SRR6323126

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV003531347	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Sep 16, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV003531347

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Sep 16, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV003531347.2

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1976G>A (p.R659H) alteration is located in exon 12 (coding exon 11) of the SLC6A17 gene. This alteration results from a G to A substitution at nucleotide position 1976, causing the arginine (R) at amino acid position 659 to be replaced by a histidine (H). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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