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NM_002880.4(RAF1):c.1201C>T (p.Arg401Trp) AND Cardiovascular phenotype

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Feb 15, 2024
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV004067590.1

Allele description [Variation Report for NM_002880.4(RAF1):c.1201C>T (p.Arg401Trp)]

NM_002880.4(RAF1):c.1201C>T (p.Arg401Trp)

Gene:
RAF1:Raf-1 proto-oncogene, serine/threonine kinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.2
Genomic location:
Preferred name:
NM_002880.4(RAF1):c.1201C>T (p.Arg401Trp)
HGVS:
  • NC_000003.12:g.12590967G>A
  • NG_007467.1:g.78213C>T
  • NM_001354689.3:c.1261C>T
  • NM_001354690.3:c.1201C>T
  • NM_001354691.3:c.958C>T
  • NM_001354692.3:c.958C>T
  • NM_001354693.3:c.1102C>T
  • NM_001354694.3:c.1018C>T
  • NM_001354695.3:c.859C>T
  • NM_002880.4:c.1201C>TMANE SELECT
  • NP_001341618.1:p.Arg421Trp
  • NP_001341619.1:p.Arg401Trp
  • NP_001341620.1:p.Arg320Trp
  • NP_001341621.1:p.Arg320Trp
  • NP_001341622.1:p.Arg368Trp
  • NP_001341623.1:p.Arg340Trp
  • NP_001341624.1:p.Arg287Trp
  • NP_002871.1:p.Arg401Trp
  • NP_002871.1:p.Arg401Trp
  • LRG_413t1:c.1201C>T
  • LRG_413t2:c.1261C>T
  • LRG_413:g.78213C>T
  • LRG_413p1:p.Arg401Trp
  • LRG_413p2:p.Arg421Trp
  • NC_000003.11:g.12632466G>A
  • NM_001354689.1:c.1261C>T
  • NM_002880.3:c.1201C>T
  • NR_148940.3:n.1645C>T
  • NR_148941.3:n.1591C>T
  • NR_148942.3:n.1530C>T
Protein change:
R287W
Molecular consequence:
  • NM_001354689.3:c.1261C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354690.3:c.1201C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354691.3:c.958C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354692.3:c.958C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354693.3:c.1102C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354694.3:c.1018C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354695.3:c.859C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002880.4:c.1201C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_148940.3:n.1645C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148941.3:n.1591C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_148942.3:n.1530C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

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Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV005019638Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)		Uncertain significance
(Feb 15, 2024) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Ambry Genetics, SCV005019638.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The p.R401W variant (also known as c.1201C>T), located in coding exon 11 of the RAF1 gene, results from a C to T substitution at nucleotide position 1201. The arginine at codon 401 is replaced by tryptophan, an amino acid with dissimilar properties. This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Based on the available evidence, the clinical significance of this alteration remains unclear.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024