NM_005502.4(ABCA1):c.1679T>C (p.Ile560Thr) AND Cardiovascular phenotype

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jan 2, 2024
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV004065244.1

Allele description [Variation Report for NM_005502.4(ABCA1):c.1679T>C (p.Ile560Thr)]

NM_005502.4(ABCA1):c.1679T>C (p.Ile560Thr)

Gene:

ABCA1:ATP binding cassette subfamily A member 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q31.1

Genomic location:

Preferred name:

NM_005502.4(ABCA1):c.1679T>C (p.Ile560Thr)

HGVS:

NC_000009.12:g.104831658A>G
NG_007981.1:g.101498T>C
NM_005502.3:c.1679T>C
NM_005502.4:c.1679T>CMANE SELECT
NP_005493.2:p.Ile560Thr
LRG_542t1:c.1679T>C
LRG_542:g.101498T>C
LRG_542p1:p.Ile560Thr
NC_000009.11:g.107593939A>G
NM_005502.4:c.1679T>C

Protein change:

I560T

Molecular consequence:

NM_005502.4:c.1679T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Cardiovascular phenotype
Identifiers:: MedGen: CN230736

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ClinVar
Conserved Domain Links for Structure (Select 28286) (2)
Conserved Domains
Rattus norvegicus 342000077094879 genomic scaffold, whole genome shotgun sequenc...
Rattus norvegicus 342000077094879 genomic scaffold, whole genome shotgun sequence
gi|74325645|gnl|WGS:AAHX|3420000770 |gb|CH474011.2|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV004849949	Ambry Genetics	criteria provided, single submitter (Ambry Variant Classification Scheme 2023)	Uncertain significance (Jan 2, 2024)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV004849949

Ambry Genetics

criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)

Uncertain significance
(Jan 2, 2024)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Ambry Genetics, SCV004849949.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

The c.1679T>C (p.I560T) alteration is located in exon 13 (coding exon 12) of the ABCA1 gene. This alteration results from a T to C substitution at nucleotide position 1679, causing the isoleucine (I) at amino acid position 560 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Oct 26, 2024

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